Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   PO847_RS16205 Genome accession   NZ_CP117197
Coordinates   3229502..3229642 (-) Length   46 a.a.
NCBI ID   WP_278103729.1    Uniprot ID   -
Organism   Bacillus velezensis strain 3ZT     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3224502..3234642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO847_RS16180 (PO847_16180) - 3224842..3225225 (-) 384 WP_014418761.1 hotdog fold thioesterase -
  PO847_RS16185 (PO847_16185) comA 3225247..3225891 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  PO847_RS16190 (PO847_16190) comP 3225972..3228263 (-) 2292 WP_022553709.1 histidine kinase Regulator
  PO847_RS16195 (PO847_16195) comX 3228275..3228439 (-) 165 WP_007613432.1 competence pheromone ComX -
  PO847_RS16200 (PO847_16200) - 3228439..3229317 (-) 879 WP_032860494.1 polyprenyl synthetase family protein -
  PO847_RS16205 (PO847_16205) degQ 3229502..3229642 (-) 141 WP_278103729.1 degradation enzyme regulation protein DegQ Regulator
  PO847_RS16210 (PO847_16210) - 3230108..3230449 (+) 342 WP_014418765.1 hypothetical protein -
  PO847_RS16215 (PO847_16215) - 3230456..3231679 (-) 1224 WP_014418766.1 EAL and HDOD domain-containing protein -
  PO847_RS16220 (PO847_16220) - 3231809..3233275 (-) 1467 WP_014418767.1 nicotinate phosphoribosyltransferase -
  PO847_RS16225 (PO847_16225) - 3233293..3233844 (-) 552 WP_003152033.1 isochorismatase family cysteine hydrolase -
  PO847_RS16230 (PO847_16230) - 3233941..3234339 (-) 399 WP_003152031.1 DUF1694 domain-containing protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5552.32 Da        Isoelectric Point: 4.9432

>NTDB_id=782793 PO847_RS16205 WP_278103729.1 3229502..3229642(-) (degQ) [Bacillus velezensis strain 3ZT]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKFS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=782793 PO847_RS16205 WP_278103729.1 3229502..3229642(-) (degQ) [Bacillus velezensis strain 3ZT]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAATTTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

86.957

100

0.87