Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   PQV96_RS01555 Genome accession   NZ_CP117193
Coordinates   349078..350700 (+) Length   540 a.a.
NCBI ID   WP_273624348.1    Uniprot ID   -
Organism   Acidovorax temperans strain LMJ     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344078..355700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQV96_RS01530 (PQV96_01530) - 344672..345337 (+) 666 WP_142082998.1 SPOR domain-containing protein -
  PQV96_RS01535 (PQV96_01535) - 345417..346073 (+) 657 WP_044396400.1 thiol:disulfide interchange protein DsbA/DsbL -
  PQV96_RS01540 (PQV96_01540) - 346197..347507 (+) 1311 WP_273624347.1 IS4 family transposase -
  PQV96_RS01545 (PQV96_01545) lptA 347587..348231 (+) 645 WP_044396402.1 lipopolysaccharide transport periplasmic protein LptA -
  PQV96_RS01550 (PQV96_01550) lptB 348228..349010 (+) 783 WP_420482177.1 LPS export ABC transporter ATP-binding protein -
  PQV96_RS01555 (PQV96_01555) rpoN/rpoN1 349078..350700 (+) 1623 WP_273624348.1 RNA polymerase factor sigma-54 Machinery gene
  PQV96_RS01560 (PQV96_01560) - 350799..352088 (+) 1290 WP_207373813.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  PQV96_RS01565 (PQV96_01565) - 352078..352563 (+) 486 WP_207373814.1 putative toxin-antitoxin system toxin component, PIN family -
  PQV96_RS01570 (PQV96_01570) - 352615..354327 (-) 1713 WP_273624349.1 ABC transporter ATP-binding protein/permease -
  PQV96_RS01575 (PQV96_01575) - 354658..355491 (-) 834 WP_273624350.1 hypothetical protein -

Sequence

Protein


Download         Length: 540 a.a.        Molecular weight: 58756.88 Da        Isoelectric Point: 4.7701

>NTDB_id=782689 PQV96_RS01555 WP_273624348.1 349078..350700(+) (rpoN/rpoN1) [Acidovorax temperans strain LMJ]
MKPGLSLRVSQHLALTPQLQQSIRLLQLSTLELGQEVEQMLDENPFLERATDEAPREEFGLEHANAPAQADDHGVDDAIY
SGASSASSTGAEGDFDASSDADHSSSVADEPDWSGDGTVEMAPNDSEWGGDAPPRNRNDSEGEEADATELARSQESLTAF
LHRQALALRLSEVDSAALRFLIESLNDDGYLEESLQELAIALAGPDDLEQIDELVHRFTVAQRLLQTLEPVGVGARNLAE
CLTLQLSALAADAHSGVPPDVVQTALQICQQPLEMLARRDVRRLTQACTEGGAAGEERTRAAMALIARLEPRPGRRFVDV
ERNIIVPDVIVRKAGRSNGTSGQQNFIVSLNPDVMPRLRVHDIYAGALRGGKGSKGGEGHAGLQQRLQEARWFIKNIQQR
FDTILRVSRAIVERQKSFFTHGELAMRPLVLRDIADELGLHESTISRVTTAKYMATPIGTYELKYFFGSGLGTETGGNAS
STAVRALIKQFVAAESPTKPLSDSQLAEMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1623 bp        

>NTDB_id=782689 PQV96_RS01555 WP_273624348.1 349078..350700(+) (rpoN/rpoN1) [Acidovorax temperans strain LMJ]
ATGAAGCCCGGCCTGTCCCTGCGCGTTTCGCAGCACTTGGCCCTGACCCCGCAGCTGCAGCAATCCATTCGGTTGCTGCA
GTTGTCCACGCTGGAGCTGGGCCAGGAAGTCGAGCAGATGCTCGACGAAAACCCTTTTCTCGAACGCGCCACCGACGAAG
CACCGCGCGAAGAGTTTGGCCTGGAGCATGCCAACGCCCCCGCCCAGGCCGACGACCACGGTGTCGATGATGCTATCTAT
TCAGGAGCTAGCAGCGCTTCATCTACGGGCGCTGAAGGCGATTTTGATGCTTCATCAGATGCCGACCACAGCAGCAGCGT
CGCTGACGAGCCCGACTGGAGCGGCGACGGCACGGTGGAGATGGCGCCCAACGACAGTGAGTGGGGTGGCGACGCCCCGC
CTCGCAACCGCAATGACTCCGAAGGCGAGGAGGCCGACGCGACCGAACTGGCGCGTTCGCAAGAGTCCCTCACCGCCTTC
CTGCACCGCCAGGCCTTGGCGCTGCGCCTGTCCGAAGTGGACAGCGCTGCTCTGCGCTTCCTGATCGAATCGCTCAACGA
CGACGGCTACCTGGAAGAGTCGCTGCAGGAGCTGGCCATTGCGTTGGCGGGCCCTGACGACCTGGAGCAGATCGACGAGC
TGGTGCACCGCTTCACCGTAGCCCAGCGCCTGCTGCAAACCCTGGAACCCGTGGGCGTGGGTGCCCGCAACCTGGCCGAG
TGCCTCACGCTGCAGCTCAGCGCTCTGGCGGCCGATGCGCACAGCGGCGTGCCGCCCGACGTGGTGCAGACTGCGCTGCA
AATCTGCCAGCAACCGCTGGAAATGCTGGCCCGCCGCGATGTGCGCCGCCTCACCCAGGCCTGCACCGAAGGCGGTGCTG
CGGGCGAAGAGCGTACCCGCGCCGCCATGGCCCTGATTGCCCGGCTGGAACCCCGCCCAGGGCGGCGCTTTGTGGACGTG
GAGCGCAACATCATCGTGCCTGATGTGATCGTGCGCAAAGCCGGGCGCAGCAACGGCACCAGCGGGCAGCAGAATTTCAT
CGTCTCGCTCAACCCTGATGTGATGCCGCGCCTGCGCGTGCATGACATCTACGCTGGCGCCCTGCGCGGCGGCAAAGGGA
GCAAGGGCGGCGAGGGCCACGCGGGCCTGCAGCAGCGCCTGCAAGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGG
TTTGACACCATCCTGCGCGTCTCGCGCGCCATCGTCGAGCGGCAAAAGAGCTTCTTCACCCATGGCGAGCTGGCCATGCG
CCCGCTGGTGCTGCGCGACATTGCCGACGAGCTGGGCCTGCACGAATCCACCATCAGCCGCGTGACCACGGCCAAGTACA
TGGCCACGCCGATTGGCACGTACGAGCTCAAGTATTTCTTCGGCTCGGGCCTGGGCACCGAAACCGGGGGCAACGCCTCC
AGCACGGCCGTGCGCGCGCTCATCAAACAGTTCGTGGCCGCTGAAAGCCCCACCAAGCCCTTGTCCGACAGCCAGTTGGC
TGAGATGCTCAAGGAGCAAGGCATTGAATGCGCCCGCCGCACCGTGGCCAAATACCGCGAAGCGCTCAAGATTGCGCCGG
CCAATTTGCGCAAGGCGTTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(383-538)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(148-364)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.311

100

0.524