Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PQC30_RS15635 Genome accession   NZ_CP117188
Coordinates   3216712..3217317 (-) Length   201 a.a.
NCBI ID   WP_053530142.1    Uniprot ID   -
Organism   Salmonella enterica subsp. diarizonae strain S499V     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3211712..3222317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQC30_RS15620 (PQC30_15620) helD 3211929..3213983 (-) 2055 WP_088760080.1 DNA helicase IV -
  PQC30_RS15625 (PQC30_15625) - 3214107..3214553 (+) 447 WP_001261216.1 YccF domain-containing protein -
  PQC30_RS15630 (PQC30_15630) yccS 3214572..3216725 (+) 2154 WP_023247033.1 YccS family putative transporter -
  PQC30_RS15635 (PQC30_15635) sxy/tfoX 3216712..3217317 (-) 606 WP_053530142.1 TfoX/Sxy family DNA transformation protein Regulator
  PQC30_RS15640 (PQC30_15640) sulA 3217534..3218043 (+) 510 WP_023247035.1 SOS-induced cell division inhibitor SulA -
  PQC30_RS15645 (PQC30_15645) ompA 3218400..3219452 (+) 1053 WP_053530176.1 porin OmpA -
  PQC30_RS15650 (PQC30_15650) matP 3219524..3219976 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  PQC30_RS15655 (PQC30_15655) - 3220162..3221922 (+) 1761 WP_053509640.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23129.84 Da        Isoelectric Point: 9.0103

>NTDB_id=782678 PQC30_RS15635 WP_053530142.1 3216712..3217317(-) (sxy/tfoX) [Salmonella enterica subsp. diarizonae strain S499V]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEQSVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRVLGAKMCWLRLRQSN
PLLTVKVLYALEGAIAGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=782678 PQC30_RS15635 WP_053530142.1 3216712..3217317(-) (sxy/tfoX) [Salmonella enterica subsp. diarizonae strain S499V]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCCTT
ATTCGGCAGCTATAGTCTGACCGTGGAAGATACCGTCTTTGCGATGGTGGCTAACGGCGAGCTTTATCTCCGCGCCTGTG
AGCAAAGCGTACCCTATTGTGTGAAGCATCCTCCCGTCTGGCTCACATTTATGAAGTGTGGACGCCCTGTTATGCTCAAC
TATTATCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAGAATATGTTACGCGTACTGGGTGCAAAAATGTGCTGGCTAAGGTTGCGACAAAGTAAT
CCTTTGCTGACGGTAAAAGTTCTGTATGCGTTAGAAGGCGCAATTGCTGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGATTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.884

99.005

0.761