Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   PO767_RS18980 Genome accession   NZ_CP117182
Coordinates   3808406..3809551 (+) Length   381 a.a.
NCBI ID   WP_022553933.1    Uniprot ID   -
Organism   Bacillus velezensis strain Lwp6     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3803406..3814551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO767_RS18960 - 3803880..3804596 (-) 717 WP_014419126.1 Crp/Fnr family transcriptional regulator -
  PO767_RS18965 narK 3804694..3805884 (-) 1191 WP_022553931.1 nitrate transporter NarK -
  PO767_RS18970 argS 3806019..3807689 (-) 1671 WP_038461659.1 arginine--tRNA ligase -
  PO767_RS18975 - 3807686..3808114 (-) 429 WP_014419128.1 DUF1934 family protein -
  PO767_RS18980 rapF 3808406..3809551 (+) 1146 WP_022553933.1 tetratricopeptide repeat protein Regulator
  PO767_RS18985 - 3809535..3809654 (+) 120 WP_015387559.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  PO767_RS18990 - 3809853..3810056 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  PO767_RS18995 - 3810070..3810273 (+) 204 WP_007407641.1 hypothetical protein -
  PO767_RS19000 - 3810308..3810493 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  PO767_RS19005 - 3810680..3810961 (+) 282 WP_007407643.1 hypothetical protein -
  PO767_RS19010 - 3811005..3811517 (+) 513 WP_022553935.1 stage II sporulation protein M -
  PO767_RS19015 - 3812108..3812326 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  PO767_RS19020 speB 3812479..3813351 (-) 873 WP_007614448.1 agmatinase -
  PO767_RS19025 speE 3813410..3814240 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45555.57 Da        Isoelectric Point: 4.5797

>NTDB_id=782637 PO767_RS18980 WP_022553933.1 3808406..3809551(+) (rapF) [Bacillus velezensis strain Lwp6]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNTAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=782637 PO767_RS18980 WP_022553933.1 3808406..3809551(+) (rapF) [Bacillus velezensis strain Lwp6]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTACGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGATCAAGATCTACATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACTGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGAGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATACGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.215

100

0.782
  rapC Bacillus subtilis subsp. subtilis str. 168

57.105

99.738

0.57