Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   PO767_RS13255 Genome accession   NZ_CP117182
Coordinates   2668496..2669263 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain Lwp6     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2663496..2674263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO767_RS13235 - 2663698..2664510 (-) 813 WP_017418169.1 pyruvate, water dikinase regulatory protein -
  PO767_RS13240 ccpN 2664536..2665174 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  PO767_RS13245 glyS 2665275..2667314 (-) 2040 WP_021494328.1 glycine--tRNA ligase subunit beta -
  PO767_RS13250 glyQ 2667307..2668194 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  PO767_RS13255 recO 2668496..2669263 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  PO767_RS13260 - 2669300..2669443 (-) 144 WP_007408286.1 YqzL family protein -
  PO767_RS13265 era 2669599..2670504 (-) 906 WP_007408285.1 GTPase Era -
  PO767_RS13270 - 2670485..2670895 (-) 411 WP_003152976.1 cytidine deaminase -
  PO767_RS13275 - 2671019..2671393 (-) 375 WP_038461537.1 diacylglycerol kinase family protein -
  PO767_RS13280 ybeY 2671374..2671847 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  PO767_RS13285 - 2671848..2673980 (-) 2133 WP_015387990.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=782613 PO767_RS13255 WP_007408287.1 2668496..2669263(-) (recO) [Bacillus velezensis strain Lwp6]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=782613 PO767_RS13255 WP_007408287.1 2668496..2669263(-) (recO) [Bacillus velezensis strain Lwp6]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATACTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89