Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   PO767_RS04285 Genome accession   NZ_CP117182
Coordinates   852557..853348 (+) Length   263 a.a.
NCBI ID   WP_022552784.1    Uniprot ID   -
Organism   Bacillus velezensis strain Lwp6     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 847557..858348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO767_RS04260 - 849551..850435 (+) 885 WP_022552781.1 PhzF family phenazine biosynthesis isomerase -
  PO767_RS04265 - 850512..851096 (+) 585 WP_022552782.1 nitroreductase -
  PO767_RS04270 - 851135..851326 (-) 192 WP_003155508.1 YfhD family protein -
  PO767_RS04275 - 851398..851508 (-) 111 WP_003155504.1 YfhE family protein -
  PO767_RS04280 - 851566..852465 (-) 900 WP_022552783.1 TIGR01777 family oxidoreductase -
  PO767_RS04285 recX 852557..853348 (+) 792 WP_022552784.1 recombination regulator RecX Regulator
  PO767_RS04290 - 853355..853669 (+) 315 WP_007408553.1 YfhH family protein -
  PO767_RS04295 - 853814..855007 (+) 1194 WP_038461766.1 MFS transporter -
  PO767_RS04300 - 855047..855436 (-) 390 WP_022552786.1 DUF2606 family protein -
  PO767_RS04305 - 855399..856310 (-) 912 WP_038461301.1 serine protease -
  PO767_RS04310 - 856455..856607 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  PO767_RS04315 - 856731..857000 (+) 270 WP_003155492.1 YfhJ family protein -
  PO767_RS04320 - 857132..857659 (+) 528 WP_022552788.1 SH3 domain-containing protein -
  PO767_RS04325 - 857745..858080 (+) 336 WP_017419152.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30964.15 Da        Isoelectric Point: 6.2729

>NTDB_id=782578 PO767_RS04285 WP_022552784.1 852557..853348(+) (recX) [Bacillus velezensis strain Lwp6]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDDQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=782578 PO767_RS04285 WP_022552784.1 852557..853348(+) (recX) [Bacillus velezensis strain Lwp6]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAGAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCTTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGATCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAACAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGTTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795