Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   EcoliRb_RS23360 Genome accession   NZ_AP025682
Coordinates   4885142..4886134 (-) Length   330 a.a.
NCBI ID   WP_000224467.1    Uniprot ID   B7MGH3
Organism   Escherichia coli strain Rb-50     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4880142..4891134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EcoliRb_RS23350 (TRECRb50_44590) yieP 4883034..4883726 (+) 693 WP_137501162.1 FadR/GntR family transcriptional regulator -
  EcoliRb_RS23355 (TRECRb50_44600) mdtD 4883749..4885176 (+) 1428 WP_137501161.1 multidrug transporter subunit MdtD -
  EcoliRb_RS23360 (TRECRb50_44610) cytR 4885142..4886134 (-) 993 WP_000224467.1 ribose operon transcriptional repressor RbsR Regulator
  EcoliRb_RS23365 (TRECRb50_44620) rbsK 4886138..4887067 (-) 930 WP_001361791.1 ribokinase -
  EcoliRb_RS23370 rbsB 4887193..4888083 (-) 891 Protein_4571 ribose ABC transporter substrate-binding protein RbsB -
  EcoliRb_RS23375 (TRECRb50_44650) rbsC 4888108..4889073 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  EcoliRb_RS23380 (TRECRb50_44660) rbsA 4889078..4890583 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  EcoliRb_RS23385 (TRECRb50_44670) rbsD 4890591..4891010 (-) 420 WP_001604258.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36581.88 Da        Isoelectric Point: 5.2141

>NTDB_id=78253 EcoliRb_RS23360 WP_000224467.1 4885142..4886134(-) (cytR) [Escherichia coli strain Rb-50]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPALQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=78253 EcoliRb_RS23360 WP_000224467.1 4885142..4886134(-) (cytR) [Escherichia coli strain Rb-50]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACAGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGTAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATTGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACAGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCTGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGGCCCTACAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAGCGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7MGH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment