Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PQ615_RS09200 Genome accession   NZ_CP117058
Coordinates   1893739..1895103 (-) Length   454 a.a.
NCBI ID   WP_003100207.1    Uniprot ID   A0A1J0N1Q0
Organism   Streptococcus iniae strain LSSM211007SI     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1888739..1900103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ615_RS09180 (PQ615_09180) tnpA 1889965..1890429 (-) 465 WP_003100201.1 IS200/IS605 family transposase -
  PQ615_RS09185 (PQ615_09185) gltX 1890619..1892064 (-) 1446 WP_003100202.1 glutamate--tRNA ligase -
  PQ615_RS09190 (PQ615_09190) - 1892258..1892971 (-) 714 WP_003100205.1 TIGR00266 family protein -
  PQ615_RS09195 (PQ615_09195) - 1893093..1893593 (-) 501 WP_003100206.1 carbonic anhydrase -
  PQ615_RS09200 (PQ615_09200) radA 1893739..1895103 (-) 1365 WP_003100207.1 DNA repair protein RadA Machinery gene
  PQ615_RS09205 (PQ615_09205) - 1895127..1895570 (-) 444 WP_003100209.1 dUTP diphosphatase -
  PQ615_RS09210 (PQ615_09210) - 1895705..1897120 (-) 1416 WP_003100211.1 PTS transporter subunit EIIC -
  PQ615_RS09215 (PQ615_09215) - 1897121..1898782 (-) 1662 WP_003100212.1 alpha-glucosidase -
  PQ615_RS09220 (PQ615_09220) - 1898909..1899622 (-) 714 WP_003100214.1 MurR/RpiR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49626.06 Da        Isoelectric Point: 6.7550

>NTDB_id=782464 PQ615_RS09200 WP_003100207.1 1893739..1895103(-) (radA) [Streptococcus iniae strain LSSM211007SI]
MAKKKTQFICQECGYQSPKYLGRCPNCSAWSSFVEEIEVKEVKNARVSLTGEKSKPVKLKDVDNIHYARTKTDMDEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLAAKGTVLYVSGEESAEQIKLRSERLGDVDNEFYLYAETNMQQVRAEIE
KLQPDFLIIDSIQTMMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTIAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKLYAPKNSLQGISVPKGIEVIGVSTVGQVLKAVFSH

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=782464 PQ615_RS09200 WP_003100207.1 1893739..1895103(-) (radA) [Streptococcus iniae strain LSSM211007SI]
ATGGCAAAAAAGAAAACACAATTTATCTGTCAAGAATGTGGCTATCAGTCGCCTAAGTACTTAGGGCGTTGCCCCAATTG
CTCCGCTTGGTCATCTTTTGTGGAAGAAATTGAAGTTAAAGAGGTTAAGAACGCTCGGGTTAGCCTGACGGGCGAAAAAA
GTAAACCCGTTAAATTAAAAGACGTTGATAACATTCACTATGCCAGAACGAAAACTGATATGGATGAGTTTAACCGTGTT
TTAGGTGGTGGTGTTGTTCCTGGAAGTTTAATTCTGATTGGTGGTGATCCAGGGATTGGAAAGTCTACCCTCTTATTACA
AGTGTCAACTCAACTTGCAGCAAAAGGAACAGTACTTTATGTTTCAGGTGAGGAGTCAGCTGAGCAAATTAAATTGCGTA
GTGAACGTCTTGGTGATGTGGATAATGAATTTTACCTCTATGCTGAAACTAATATGCAACAGGTTCGTGCTGAGATTGAA
AAATTACAACCAGACTTTCTTATTATTGACTCTATTCAAACCATGATGAGTCCAGATATTACTGGTGTTCAAGGATCTGT
CAGTCAGGTTAGAGAAGTAACAGCTGAGCTGATGCAGTTGGCTAAAACCAATAACATCGCAACCTTTATTGTTGGGCATG
TGACAAAAGAAGGAACTATTGCAGGACCTCGGATGTTGGAACATATGGTAGATACTGTTCTTTATTTTGAAGGGGAGCGC
CACCATACTTTTCGTATTTTACGGGCTGTTAAAAACCGTTTTGGTTCAACCAATGAAATTGGTATTTTTGAGATGCAATC
TGGTGGCTTAGTTGAAGTGCTCAATCCTAGTCAAGTTTTTCTGGAAGAACGCCTTGATGGTGCAACGGGTTCAGCTATTG
TGGTTACAATGGAGGGGAGTCGTCCTATCTTAGCTGAGGTTCAATCTCTTGTGACACCAACTGTTTTTGGTAATGCCAGA
CGAACAACAACAGGTCTTGATTTTAACCGAGTGAGTTTAATTATGGCGGTGCTTGAAAAACGTTGTGGCTTACTCTTGCA
GAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTCAAATTAGATGAGCCAGCTATTGATTTAGCAGTTGCAGTTGCAA
TTGCATCGAGTTATAAAGAAAAACCAACCAATCCACAAGAAGCATTTCTTGGAGAAATTGGCTTGACTGGGGAAATTCGC
CGTGTGACGCGTATTGAGCAACGGATAAATGAAGCGGCAAAGCTTGGCTTTACAAAACTATATGCTCCTAAGAATTCCTT
ACAAGGGATAAGTGTTCCAAAAGGAATTGAAGTCATTGGGGTGTCGACAGTTGGTCAAGTGTTAAAGGCTGTCTTCTCAC
ATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J0N1Q0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

86.313

99.78

0.861
  radA Streptococcus pneumoniae D39

86.313

99.78

0.861
  radA Streptococcus pneumoniae R6

86.313

99.78

0.861
  radA Streptococcus pneumoniae TIGR4

86.313

99.78

0.861
  radA Streptococcus mitis NCTC 12261

86.093

99.78

0.859
  radA Streptococcus mitis SK321

86.093

99.78

0.859
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.78

0.626