Detailed information NTG0078245

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: EcoliRb_RS22400
• Genome accession: NZ_AP025682
• Coordinates: 4687280..4688305 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain Rb-50
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4682280..4693305

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EcoliRb_RS22380 (TRECRb50_42820)	metJ	4683465..4683782 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
EcoliRb_RS22385 (TRECRb50_42830)	yiiX	4683842..4684450 (+)	609	WP_000702302.1	YiiX family permuted papain-like enzyme	-
EcoliRb_RS22390 (TRECRb50_42840)	rpmE	4684511..4684723 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
EcoliRb_RS22395 (TRECRb50_42850)	priA	4684926..4687124 (+)	2199	WP_137501583.1	primosomal protein N'	Machinery gene
EcoliRb_RS22400 (TRECRb50_42860)	cytR	4687280..4688305 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
EcoliRb_RS22405 (TRECRb50_42870)	ftsN	4688397..4689356 (+)	960	WP_000068832.1	cell division protein FtsN	-
EcoliRb_RS22410 (TRECRb50_42880)	hslV	4689449..4689979 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
EcoliRb_RS22415 (TRECRb50_42890)	hslU	4689989..4691320 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
EcoliRb_RS22420 (TRECRb50_42900)	menA	4691387..4692313 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
EcoliRb_RS22425 (TRECRb50_42910)	rraA	4692406..4692891 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=78245 EcoliRb_RS22400 WP_000644904.1 4687280..4688305(+) (cytR) [Escherichia coli strain Rb-50]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=78245 EcoliRb_RS22400 WP_000644904.1 4687280..4688305(+) (cytR) [Escherichia coli strain Rb-50]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGTTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCGCAGGCAAAACGCCA
GGGGCTGAAAGTACCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628