Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   PQ615_RS00980 Genome accession   NZ_CP117058
Coordinates   216813..217841 (+) Length   342 a.a.
NCBI ID   WP_304482247.1    Uniprot ID   -
Organism   Streptococcus iniae strain LSSM211007SI     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 211813..222841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ615_RS00955 (PQ615_00955) - 212071..213402 (+) 1332 WP_003100985.1 dipeptidase -
  PQ615_RS00960 (PQ615_00960) arcC 213427..214377 (+) 951 WP_003100986.1 carbamate kinase -
  PQ615_RS00965 (PQ615_00965) asnA 214538..215530 (+) 993 WP_003100987.1 aspartate--ammonia ligase -
  PQ615_RS00970 (PQ615_00970) rsmD 215806..216345 (+) 540 WP_003100988.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PQ615_RS00975 (PQ615_00975) coaD 216335..216826 (+) 492 WP_003100989.1 pantetheine-phosphate adenylyltransferase -
  PQ615_RS00980 (PQ615_00980) sepM 216813..217841 (+) 1029 WP_304482247.1 SepM family pheromone-processing serine protease Regulator
  PQ615_RS00985 (PQ615_00985) - 217960..218943 (+) 984 WP_016355854.1 LacI family DNA-binding transcriptional regulator -
  PQ615_RS00990 (PQ615_00990) rbsK 218936..219847 (+) 912 WP_003100992.1 ribokinase -
  PQ615_RS00995 (PQ615_00995) rbsD 219822..220220 (+) 399 WP_003100993.1 D-ribose pyranase -
  PQ615_RS01000 (PQ615_01000) - 220234..221712 (+) 1479 WP_003100996.1 sugar ABC transporter ATP-binding protein -
  PQ615_RS01005 (PQ615_01005) rbsC 221714..222658 (+) 945 WP_003100998.1 ribose ABC transporter permease -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37455.09 Da        Isoelectric Point: 9.7051

>NTDB_id=782417 PQ615_RS00980 WP_304482247.1 216813..217841(+) (sepM) [Streptococcus iniae strain LSSM211007SI]
MKVINKIKWWLLGIIAFLGLAFTFLYPLPYYIEMPGGAYDIKSVLEIKGHEDKEKGSYNFVAVSLGRATLAQVLYAWLTP
FTEIAPAEETTGGYSDEDYMRINQYYLETSQNDAIYKGLKLAGKEVSLDYLGVYVLDVSKDSSFKGVLNIADTVTAVNNK
HFKSSADLIKYVSGLSLGDKVSVQYTSNGVDQSKKGHIIKLKNGKNGIGIGLTDYTKVHTDQEITFKTEGVGGPSAGLMF
TLDRMNKEDLRKGRKIAGTGTIDREGKVGDIGGAGLKVVAAANEGADVFFVPNNPVDKRVKKVNPKAVTNYQEAKAAAKK
LKTKMKIVPVRNVQEAIAYLQQ

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=782417 PQ615_RS00980 WP_304482247.1 216813..217841(+) (sepM) [Streptococcus iniae strain LSSM211007SI]
ATGAAAGTTATTAATAAAATCAAATGGTGGTTACTTGGAATTATAGCCTTTTTAGGGTTAGCCTTTACTTTTTTATACCC
TTTGCCTTATTATATTGAAATGCCTGGTGGTGCTTATGATATTAAATCTGTTTTAGAGATTAAAGGGCATGAGGATAAGG
AAAAAGGTTCCTATAATTTTGTTGCGGTAAGCCTTGGCCGAGCAACTCTTGCACAGGTTCTTTATGCATGGTTAACCCCT
TTTACAGAAATTGCTCCAGCTGAAGAAACAACCGGTGGCTACAGTGATGAAGATTACATGCGTATTAACCAGTATTACTT
AGAAACATCCCAAAACGATGCCATCTATAAAGGGTTAAAATTAGCTGGCAAAGAGGTTTCTCTGGATTATTTAGGGGTTT
ATGTTTTAGATGTTAGTAAAGATTCCTCATTTAAAGGCGTTTTAAACATTGCCGATACTGTGACTGCAGTTAACAACAAG
CATTTTAAAAGCTCTGCTGATTTAATCAAATATGTCTCTGGCTTAAGTTTAGGTGATAAGGTTAGTGTTCAATACACGTC
AAATGGCGTTGACCAATCTAAGAAGGGCCATATCATCAAGTTGAAGAACGGTAAGAATGGGATTGGTATTGGCTTGACAG
ACTATACCAAGGTTCATACAGACCAAGAGATTACCTTCAAAACAGAAGGGGTTGGAGGTCCAAGTGCTGGACTCATGTTT
ACCCTTGATCGAATGAATAAGGAAGATTTGCGAAAGGGTCGTAAAATCGCTGGTACAGGTACCATTGATAGAGAAGGAAA
AGTTGGTGATATTGGTGGAGCGGGTCTTAAAGTCGTTGCTGCAGCTAACGAAGGAGCAGATGTCTTTTTTGTGCCAAACA
ACCCAGTTGATAAACGGGTTAAAAAGGTGAATCCTAAAGCAGTAACAAATTATCAAGAAGCCAAAGCAGCAGCAAAAAAA
TTAAAAACAAAAATGAAAATAGTTCCAGTCAGAAATGTTCAGGAAGCAATTGCTTATTTGCAACAATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(128-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

68.986

100

0.696