Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PQE20_RS07535 Genome accession   NZ_CP117054
Coordinates   1602784..1603302 (-) Length   172 a.a.
NCBI ID   WP_005448429.1    Uniprot ID   A0A9X3RVD3
Organism   Vibrio harveyi strain VH21FL     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1597784..1608302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQE20_RS07510 (PQE20_07510) rimM 1597836..1598384 (-) 549 WP_005446245.1 ribosome maturation factor RimM -
  PQE20_RS07515 (PQE20_07515) rpsP 1598413..1598661 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  PQE20_RS07520 (PQE20_07520) ffh 1598872..1600254 (-) 1383 WP_005446242.1 signal recognition particle protein -
  PQE20_RS07525 (PQE20_07525) - 1600468..1601262 (+) 795 WP_005446240.1 cytochrome C assembly family protein -
  PQE20_RS07530 (PQE20_07530) - 1601417..1602691 (+) 1275 WP_005446238.1 HlyC/CorC family transporter -
  PQE20_RS07535 (PQE20_07535) luxS 1602784..1603302 (-) 519 WP_005448429.1 S-ribosylhomocysteine lyase Regulator
  PQE20_RS07540 (PQE20_07540) - 1603389..1603952 (-) 564 WP_005448430.1 hypothetical protein -
  PQE20_RS07545 (PQE20_07545) gshA 1604014..1605582 (-) 1569 WP_272759803.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.80 Da        Isoelectric Point: 4.8563

>NTDB_id=782377 PQE20_RS07535 WP_005448429.1 1602784..1603302(-) (luxS) [Vibrio harveyi strain VH21FL]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=782377 PQE20_RS07535 WP_005448429.1 1602784..1603302(-) (luxS) [Vibrio harveyi strain VH21FL]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCAGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855