Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   PQE20_RS05315 Genome accession   NZ_CP117054
Coordinates   1097062..1098465 (-) Length   467 a.a.
NCBI ID   WP_272759727.1    Uniprot ID   -
Organism   Vibrio harveyi strain VH21FL     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1092062..1103465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQE20_RS05280 (PQE20_05280) moaE 1092595..1093050 (-) 456 WP_009702831.1 molybdopterin synthase catalytic subunit MoaE -
  PQE20_RS05285 (PQE20_05285) moaD 1093052..1093309 (-) 258 WP_005444716.1 molybdopterin synthase sulfur carrier subunit -
  PQE20_RS05290 (PQE20_05290) moaC 1093309..1093785 (-) 477 WP_005444714.1 cyclic pyranopterin monophosphate synthase MoaC -
  PQE20_RS05295 (PQE20_05295) moaB 1093812..1094324 (-) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  PQE20_RS05300 (PQE20_05300) moaA 1094426..1095415 (-) 990 WP_005444703.1 GTP 3',8-cyclase MoaA -
  PQE20_RS05305 (PQE20_05305) - 1095713..1096606 (+) 894 WP_005444701.1 YvcK family protein -
  PQE20_RS05310 (PQE20_05310) luxU 1096721..1097065 (-) 345 WP_005444699.1 quorum-sensing phosphorelay protein LuxU -
  PQE20_RS05315 (PQE20_05315) luxO 1097062..1098465 (-) 1404 WP_272759727.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  PQE20_RS05320 (PQE20_05320) uvrB 1099056..1101086 (-) 2031 WP_005444695.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52208.61 Da        Isoelectric Point: 5.6942

>NTDB_id=782371 PQE20_RS05315 WP_272759727.1 1097062..1098465(-) (luxO) [Vibrio harveyi strain VH21FL]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
ESKFIEPDILTVSDIMPLWMTEKMAIEQAIQACDGNIPRAAGYLDVSPSTIYRKLQAWNSRDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=782371 PQE20_RS05315 WP_272759727.1 1097062..1098465(-) (luxO) [Vibrio harveyi strain VH21FL]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTACTAATGGTAGAAGACACCGCATCTGTCGCGGCATTGTACCG
TTCTTACCTAACGCCACTCGGCATCGATATCAATATTGTTGGTACAGGCAGAGACGCAATCGAAAGTCTGAACCACCGTA
TTCCTGATCTTATTCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGATGTATTGCACGCAGTGAAGAAAAGTCAC
CCAGACGTGCCAATTATCTTTATGACTGCCCATGGCTCTATCGATACTGCGGTAGAAGCAATGCGTCATGGTTCTCAAGA
TTTCTTAATTAAACCATGTGAAGCTGACCGTTTACGCGTCACGGTAAATAATGCGATCCGTAAAGCTACCAAGCTTAAAA
ATGAAGCGGATAATCCGGGCAACCAAAATTACCAAGGCTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGCACT
ATTGACTCGGCGGCGAGCAGTAAAGCAAGTATTTTCATCACGGGTGAAAGTGGTACTGGTAAAGAGGTGTGTGCCGAGGC
AATTCACGCAGCAAGCAAACGTGGTGATAAGCCGTTTATCGCCATTAACTGTGCTGCCATCCCTAAAGATCTGATTGAGA
GCGAGCTATTTGGTCACGTAAAAGGTGCATTTACTGGCGCGGCAAATGACCGACAAGGTGCGGCTGAGCTTGCTGACGGT
GGCACTTTGTTTCTTGATGAGCTTTGTGAGATGGACCTAGACCTCCAGACAAAGTTACTAAGATTCATTCAAACGGGGAC
GTTCCAAAAAGTCGGTTCTTCGAAGATGAAGAGTGTGGACGTACGTTTTGTTTGCGCAACGAACCGCGACCCTTGGAAGG
AAGTGCAAGAAGGGCGTTTTCGTGAAGACTTGTACTATCGTTTGTACGTGATTCCATTGCACCTTCCACCGCTGCGTGAG
CGTGGCGAAGATGTAATTGAGATTGCTTATTCGTTGCTTGGTTATATGTCTCACGAAGAAGGCAAAAGCTTCATCCGCTT
CTCGCAAGAGGTGATTGATAGGTTCAATAGTTATGAATGGCCGGGTAACGTTCGTCAGTTGCAAAACGTACTGCGCAACA
TTGTGGTATTGAACAACGGCAAAGAGATTACGTTAGACATGCTGCCACCACCGTTGAACCAGCCAGTGGTTCGTCAATCG
GAATCAAAATTTATTGAACCTGACATTTTGACGGTGTCAGACATTATGCCGCTTTGGATGACTGAGAAAATGGCCATCGA
GCAGGCGATTCAAGCGTGTGATGGCAATATTCCACGCGCTGCGGGCTACTTAGATGTCAGCCCATCGACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAGGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.607

95.931

0.831