Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NL407_RS16070 Genome accession   NZ_CP117053
Coordinates   3039269..3039898 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MLI106K4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3034269..3044898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL407_RS16055 (NL407_016050) helD 3034511..3036565 (-) 2055 WP_001295354.1 DNA helicase IV -
  NL407_RS16060 (NL407_016055) yccF 3036688..3037134 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NL407_RS16065 (NL407_016060) yccS 3037144..3039306 (+) 2163 WP_000875058.1 YccS family putative transporter -
  NL407_RS16070 (NL407_016065) sxy/tfoX 3039269..3039898 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NL407_RS16075 (NL407_016070) sulA 3040117..3040626 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NL407_RS16080 (NL407_016075) ompA 3040983..3042023 (+) 1041 WP_000750416.1 porin OmpA -
  NL407_RS16085 (NL407_016080) matP 3042099..3042551 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NL407_RS16090 (NL407_016085) ycbZ 3042737..3044497 (+) 1761 WP_000152888.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=782359 NL407_RS16070 WP_000839153.1 3039269..3039898(-) (sxy/tfoX) [Escherichia coli strain MLI106K4]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=782359 NL407_RS16070 WP_000839153.1 3039269..3039898(-) (sxy/tfoX) [Escherichia coli strain MLI106K4]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1