Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Q3V23_RS20845 Genome accession   NZ_CP130487
Coordinates   4669573..4671471 (+) Length   632 a.a.
NCBI ID   WP_189382480.1    Uniprot ID   A0ABW6UA68
Organism   Streptomyces sp. VNUA116     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4664573..4676471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V23_RS20825 (Q3V23_20825) - 4665037..4665750 (-) 714 WP_106674565.1 DUF2993 domain-containing protein -
  Q3V23_RS20830 (Q3V23_20830) - 4665861..4667264 (-) 1404 WP_302863488.1 hypothetical protein -
  Q3V23_RS20835 (Q3V23_20835) - 4667275..4667559 (-) 285 WP_302868848.1 MoaD/ThiS family protein -
  Q3V23_RS20840 (Q3V23_20840) rcrP 4667714..4669435 (+) 1722 WP_302863490.1 ABC transporter ATP-binding protein Regulator
  Q3V23_RS20845 (Q3V23_20845) rcrQ 4669573..4671471 (+) 1899 WP_189382480.1 ABC transporter ATP-binding protein Regulator
  Q3V23_RS20850 (Q3V23_20850) - 4671642..4672436 (-) 795 WP_302868849.1 S9 family peptidase -
  Q3V23_RS20855 (Q3V23_20855) - 4672770..4673546 (+) 777 WP_106674559.1 response regulator transcription factor -
  Q3V23_RS20860 (Q3V23_20860) - 4673571..4674599 (+) 1029 WP_106674558.1 LacI family DNA-binding transcriptional regulator -
  Q3V23_RS20865 (Q3V23_20865) - 4674604..4675311 (-) 708 WP_302863494.1 helix-turn-helix domain-containing protein -
  Q3V23_RS20870 (Q3V23_20870) - 4675566..4676231 (+) 666 WP_302863496.1 DUF4097 family beta strand repeat-containing protein -

Sequence

Protein


Download         Length: 632 a.a.        Molecular weight: 68366.70 Da        Isoelectric Point: 5.3233

>NTDB_id=782263 Q3V23_RS20845 WP_189382480.1 4669573..4671471(+) (rcrQ) [Streptomyces sp. VNUA116]
MGGQPTERSMDFAGSAKRLLGTLRPERSLITVALVLCVASVTLSVLGPKILGRATDLIFAGVIGNKFPDGITKAEAVEQM
RRQGNGTVADLLGSVDFTPGRGIDFDAVGEVLLWVLLIYVGASLFGLVQARIATTVVQRAVFRLRRRVEEKLGRLPLSYF
DKQPRGEVLSRATNDIDNIAQTLQQTMSQIVTSLLTIAGVLAVMFWISWLLALVALVTVPVSVVVATKIGKRAQPQFVAQ
WKTTGKLNAHIEEMYTGHALVKVFGREKESAEIFRKENEDLFQAGFKAQFISGVIQPAMMFIGNLNYVLVAVVGGLRVAS
GALSIGDVQAFVQYSRQFSQPLTQVASMANLVQSGVASAERVFELLDAEEQSADPADAPKPDRVRGEVAFEQVSFRYEPD
KPLIEDLSLTVRPGQTVAIVGPTGAGKTTLVNLLMRFYEVGGGRITLDGTDIAAMSREELRSHIGMVLQDTWLFGGTIAD
NIAYGAPAGTSMEKIVAAAKATHVDRFVRTLPDGYDTVIDDEGSNVSVGEKQLITIARAFLAEPEILVLDEATSSVDTRT
EVLIQQAMGRLRTGRTSFVIAHRLSTIRDADVILVMESGRIVEQGTHDALLEAGGAYARLYEAQFAEPVVEA

Nucleotide


Download         Length: 1899 bp        

>NTDB_id=782263 Q3V23_RS20845 WP_189382480.1 4669573..4671471(+) (rcrQ) [Streptomyces sp. VNUA116]
ATGGGCGGCCAGCCCACCGAGCGGTCCATGGACTTCGCCGGGTCCGCCAAGCGGCTGCTGGGCACCCTCAGACCCGAGCG
GTCCCTGATCACCGTCGCGCTCGTCCTGTGCGTCGCGAGCGTCACCCTGTCGGTCCTCGGGCCGAAGATCCTCGGCCGGG
CCACCGACCTGATCTTCGCGGGGGTCATAGGCAACAAGTTCCCCGACGGCATCACCAAGGCCGAGGCCGTCGAGCAGATG
CGGCGGCAGGGCAACGGCACCGTCGCCGACCTGCTCGGCTCCGTCGACTTCACCCCCGGCCGGGGCATCGACTTCGACGC
CGTGGGCGAGGTGCTGCTGTGGGTCCTGCTGATCTACGTCGGCGCGTCCCTGTTCGGGCTCGTCCAGGCGCGGATCGCCA
CCACCGTCGTGCAGCGCGCCGTCTTCCGGCTGCGCCGCCGCGTCGAGGAGAAGCTCGGCCGGCTGCCGCTCAGCTACTTC
GACAAGCAGCCGCGCGGCGAGGTCCTCTCCCGCGCCACGAACGACATCGACAACATCGCCCAGACGCTCCAGCAGACCAT
GAGCCAGATCGTCACCTCGCTGCTGACGATCGCCGGCGTGCTCGCCGTCATGTTCTGGATCTCCTGGCTGCTCGCCCTGG
TGGCGCTGGTCACCGTCCCGGTGTCCGTCGTCGTCGCCACGAAGATCGGCAAGCGGGCGCAGCCGCAGTTCGTCGCCCAG
TGGAAGACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACGCGCTGGTGAAGGTCTTCGGCCGCGA
GAAGGAGTCCGCGGAGATCTTCCGCAAGGAGAACGAGGACCTCTTCCAGGCCGGCTTCAAGGCCCAGTTCATCTCGGGCG
TCATCCAGCCCGCGATGATGTTCATCGGCAACCTCAACTACGTGCTCGTCGCCGTCGTCGGCGGCCTGCGGGTCGCCTCC
GGCGCGCTGTCCATCGGTGACGTGCAGGCCTTCGTGCAGTACTCGCGCCAGTTCAGTCAGCCGCTCACCCAGGTGGCCTC
CATGGCCAACCTCGTGCAGTCCGGCGTCGCCTCCGCCGAGCGCGTCTTCGAGCTGCTCGACGCCGAGGAGCAGTCCGCCG
ACCCGGCGGACGCCCCGAAGCCGGACCGGGTGCGCGGCGAGGTCGCCTTCGAGCAGGTCTCCTTCCGCTACGAGCCCGAC
AAGCCCCTCATCGAGGACCTGTCGCTGACCGTGCGGCCCGGTCAGACCGTGGCCATCGTCGGCCCCACCGGCGCCGGCAA
GACCACGCTGGTCAACCTGCTCATGCGGTTCTACGAGGTGGGCGGCGGCCGCATCACCCTCGACGGGACCGACATCGCCG
CCATGTCGCGCGAGGAGCTCCGCTCCCACATCGGCATGGTGCTCCAGGACACCTGGCTCTTCGGCGGCACGATCGCGGAC
AACATCGCCTACGGGGCGCCCGCCGGCACCTCCATGGAGAAGATCGTCGCGGCGGCGAAGGCCACGCACGTCGACCGCTT
CGTGCGGACCCTTCCCGACGGCTACGACACCGTCATCGACGACGAGGGCTCCAACGTCAGCGTCGGCGAGAAGCAGCTCA
TCACCATCGCCCGGGCGTTCCTGGCAGAGCCGGAGATCCTCGTCCTCGACGAGGCGACCAGCTCCGTCGACACCCGTACG
GAGGTCCTCATCCAGCAGGCGATGGGCCGCCTGCGCACGGGCCGCACGAGCTTCGTGATCGCGCACCGGCTCTCCACGAT
CCGGGACGCGGACGTCATCCTCGTGATGGAGTCCGGCCGGATCGTGGAACAGGGCACGCACGACGCGCTGCTGGAAGCGG
GGGGCGCGTACGCGCGCCTCTACGAGGCGCAGTTTGCTGAACCGGTGGTCGAAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(405-554)

ABC transporter transmembrane region (ABC_membrane)

(31-342)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.653

97.627

0.407