Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PO908_RS07875 Genome accession   NZ_CP117042
Coordinates   1516673..1518433 (-) Length   586 a.a.
NCBI ID   WP_021002021.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CGMH_KH1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1511673..1523433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO908_RS07850 (PO908_07825) - 1512128..1512853 (-) 726 WP_021002016.1 GntR family transcriptional regulator -
  PO908_RS07855 (PO908_07830) celB 1512887..1514155 (-) 1269 WP_021002017.1 PTS cellobiose transporter subunit IIC -
  PO908_RS07860 (PO908_07835) - 1514300..1515697 (+) 1398 WP_021002018.1 glycoside hydrolase family 1 protein -
  PO908_RS07865 (PO908_07840) - 1515831..1516151 (-) 321 WP_021002019.1 PTS cellobiose transporter subunit IIA -
  PO908_RS07870 (PO908_07845) - 1516162..1516476 (-) 315 WP_021002020.1 PTS cellobiose transporter subunit IIB -
  PO908_RS07875 (PO908_07850) rcrQ 1516673..1518433 (-) 1761 WP_021002021.1 ABC transporter ATP-binding protein Regulator
  PO908_RS07880 (PO908_07855) rcrP 1518423..1520189 (-) 1767 WP_021002022.1 ABC transporter ATP-binding protein Regulator
  PO908_RS07885 (PO908_07860) - 1520182..1520640 (-) 459 WP_003039423.1 MarR family winged helix-turn-helix transcriptional regulator -
  PO908_RS07890 (PO908_07865) - 1520798..1521208 (-) 411 WP_021002023.1 peptide deformylase -
  PO908_RS07895 (PO908_07870) scrK 1521275..1522174 (-) 900 WP_021002024.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64950.95 Da        Isoelectric Point: 5.8437

>NTDB_id=782262 PO908_RS07875 WP_021002021.1 1516673..1518433(-) (rcrQ) [Streptococcus anginosus strain CGMH_KH1]
MENKKSSLFSQVKPYLKGFQLPLLIAFVGAAVSSIITVYGPDKLKEITNLITEGMRSQIDLKSISNIALFLAILYAAGAL
LNYVQSFIISSVIQHFSKRLRTAIAEKINKLPLCYFDSHSQGDTLSRVTNDVDTVGQSLNQSLGTVISSSLLLVAVLFMM
FYNNVVLSFVTIGSVLIGFAFVALIMGKSQRFFRAQQENLASVNGYVEEMYSGHNVIVSYNATDESKVAFQTLNTNLYNS
MWKSQFISGIMMPLMMFVGNFGYVMVVLVGASMALNGDVTMGTIVAFMVYVRIFSQPLSQIAQGITTLQQASAAMGRVFE
FLAEPEMENDEHKSQQLTILKGDVTFDNVFFGYNPDRTIIHDFSANAKAGQKIAIVGPTGAGKTTIVNLLMKFYEIDKGR
ITIDGVDTKRMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKNISDEAVVAAAKAVGVHHFIKTLPKGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HEQLMEQNGFYADLYNSQFDEDAEYV

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=782262 PO908_RS07875 WP_021002021.1 1516673..1518433(-) (rcrQ) [Streptococcus anginosus strain CGMH_KH1]
ATGGAAAATAAAAAATCGTCTTTATTTAGCCAAGTGAAACCTTATCTCAAAGGTTTTCAGCTTCCATTGCTCATTGCATT
TGTGGGAGCGGCAGTGTCTAGTATTATTACAGTTTATGGACCGGACAAATTAAAAGAAATTACCAACCTTATCACAGAGG
GGATGCGAAGTCAGATTGATTTGAAATCAATCTCCAACATTGCTCTTTTCTTAGCGATTTTGTACGCAGCAGGTGCTTTG
TTAAATTACGTTCAATCTTTTATCATTTCATCTGTTATTCAGCATTTTTCCAAGCGCTTGCGGACAGCTATTGCTGAAAA
AATCAATAAATTGCCTCTATGCTATTTTGACAGCCATTCCCAAGGGGACACTCTTTCACGGGTCACAAATGACGTGGATA
CTGTCGGACAATCTTTGAACCAAAGTTTAGGAACGGTGATTTCATCAAGTTTGCTTCTCGTTGCGGTTCTCTTTATGATG
TTTTACAATAATGTGGTCTTGTCCTTTGTAACGATTGGTTCAGTCTTGATTGGCTTTGCCTTTGTTGCTTTGATTATGGG
AAAATCTCAACGATTCTTCCGAGCGCAACAAGAAAATCTTGCCAGCGTCAATGGCTATGTGGAAGAAATGTACTCTGGGC
ATAATGTCATTGTCAGCTACAATGCCACAGACGAATCCAAAGTAGCCTTTCAAACACTTAATACTAACCTTTACAACAGT
ATGTGGAAATCACAATTCATTTCAGGGATTATGATGCCGCTTATGATGTTTGTAGGGAACTTCGGTTACGTTATGGTTGT
TTTGGTTGGAGCGAGCATGGCCTTGAATGGCGATGTCACTATGGGAACGATTGTTGCCTTTATGGTATATGTACGGATTT
TCTCTCAACCGTTGTCACAAATTGCACAAGGGATTACTACTCTTCAACAAGCTAGTGCTGCTATGGGGCGTGTATTTGAG
TTTTTAGCAGAGCCGGAAATGGAAAATGATGAGCACAAGTCTCAACAGCTCACAATTTTAAAGGGTGATGTTACCTTTGA
TAATGTATTCTTTGGCTACAATCCGGATCGAACAATTATTCATGATTTTTCTGCCAATGCAAAAGCAGGGCAAAAAATTG
CCATTGTCGGCCCGACCGGTGCTGGGAAGACGACCATTGTCAACTTGCTCATGAAATTTTATGAGATTGATAAGGGTCGC
ATTACAATTGACGGTGTTGATACAAAGCGAATGAAACGTTCTGAGGTACACGATGCCTTCTCCATGGTTCTTCAAGACAC
TTGGCTATTTGAGGGAACGATTAAGGAAAATTTGATTTACAATCAGAAAAATATTTCTGACGAAGCAGTTGTGGCAGCTG
CCAAAGCTGTTGGGGTTCATCACTTCATCAAAACTTTGCCAAAAGGATATGATACGGTGCTGGACGATACTGTGAGCCTC
TCTGTTGGGCAAAAGCAATTGCTGACCATTGCGCGTGCCCTTCTTAAAGATGCTCCATTACTTATCTTGGACGAAGCGAC
TTCATCTGTTGATACACGGACGGAAGAGCTGATTCAAAAAGCGATGGATAAACTAATGGAAGGACGGACTTCCTTTGTCA
TTGCTCACCGTTTGTCAACGATTCGTAATGCTGATTTAATTTTGGTTATGCGAGATGGCAATATCATTGAACAAGGCAAT
CATGAACAATTGATGGAACAAAACGGCTTCTATGCTGATCTTTACAATAGTCAATTCGATGAAGACGCAGAGTATGTGTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

72.165

99.317

0.717