Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   Q3V23_RS20840 Genome accession   NZ_CP130487
Coordinates   4667714..4669435 (+) Length   573 a.a.
NCBI ID   WP_302863490.1    Uniprot ID   -
Organism   Streptomyces sp. VNUA116     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4662714..4674435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V23_RS20810 (Q3V23_20810) - 4662961..4663218 (-) 258 WP_302863481.1 DUF3099 domain-containing protein -
  Q3V23_RS20815 (Q3V23_20815) - 4663362..4663649 (-) 288 WP_302863482.1 DUF1416 domain-containing protein -
  Q3V23_RS20820 (Q3V23_20820) - 4663704..4664546 (-) 843 WP_302863483.1 sulfurtransferase -
  Q3V23_RS20825 (Q3V23_20825) - 4665037..4665750 (-) 714 WP_106674565.1 DUF2993 domain-containing protein -
  Q3V23_RS20830 (Q3V23_20830) - 4665861..4667264 (-) 1404 WP_302863488.1 hypothetical protein -
  Q3V23_RS20835 (Q3V23_20835) - 4667275..4667559 (-) 285 WP_302868848.1 MoaD/ThiS family protein -
  Q3V23_RS20840 (Q3V23_20840) rcrP 4667714..4669435 (+) 1722 WP_302863490.1 ABC transporter ATP-binding protein Regulator
  Q3V23_RS20845 (Q3V23_20845) rcrQ 4669573..4671471 (+) 1899 WP_189382480.1 ABC transporter ATP-binding protein Regulator
  Q3V23_RS20850 (Q3V23_20850) - 4671642..4672436 (-) 795 WP_302868849.1 S9 family peptidase -
  Q3V23_RS20855 (Q3V23_20855) - 4672770..4673546 (+) 777 WP_106674559.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 61642.54 Da        Isoelectric Point: 5.0441

>NTDB_id=782262 Q3V23_RS20840 WP_302863490.1 4667714..4669435(+) (rcrP) [Streptomyces sp. VNUA116]
MLVRLSRAYLRPYSTSIALIVLLQLVQTLATLYLPSLNADIVDNGVVKGDTGYILSLGGGMLAVTLAQIVCAIGATYFGA
RTAMAVGRDLRAAVFDRVQSFSAREMGHFGAPSLITRTTNDVQQIQLLVLMAFTLMVSAPIMCVGGILMALDQDVPLSAL
LLVIVPVLGVIVWRMRPIFRGVQDRIDTVNRVLREQITGIRVIRAFVRDTHERERFDGANAELMDVSLKAGRLMSLMFPS
VMLVVNLSSIAVLWFGGHRIESGDMEIGALTAFLSYLMQILMAVMMATFMFMMVPRAEVCAERVQEVLATDSSVVPPANP
VTALRGGGHLELSGVEFRYPGAEEPVLKDISLVARPGEITAVIGSTGSGKSTLLGLIPRLFDATAGTVTVGGVDVRELDP
ARSAEAVGLVPQKPYLFSGTVASNLRYGRPDATDEELWAALETAQARDFVEGMDGGLEAPIAQGGTNVSGGQRQRLAIAR
ALVRKPDIYLFDDSFSALDYATDARLRAALARETGNATVVIVAQRVSTIRDADRIVVLDEGRVVGTGTHGELMAGNETYR
EIVLSQLTEEEAA

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=782262 Q3V23_RS20840 WP_302863490.1 4667714..4669435(+) (rcrP) [Streptomyces sp. VNUA116]
GTGCTGGTCCGACTATCACGGGCATATCTGAGGCCCTACTCCACTTCGATCGCGCTGATCGTGCTGCTGCAGCTCGTCCA
GACGCTTGCCACGCTCTACCTACCCTCCCTCAACGCCGACATCGTCGACAACGGTGTCGTGAAGGGTGACACCGGCTACA
TCCTGTCCCTCGGTGGCGGGATGCTCGCGGTCACCCTGGCCCAGATCGTCTGCGCGATCGGTGCGACGTACTTCGGCGCC
CGGACCGCGATGGCGGTCGGGCGCGATCTGCGCGCCGCCGTCTTCGACCGCGTGCAGTCCTTCTCCGCGCGCGAGATGGG
GCACTTCGGTGCGCCCTCGCTGATCACCCGCACCACGAACGACGTGCAGCAGATCCAGCTGCTCGTCCTGATGGCGTTCA
CGCTGATGGTGTCCGCGCCGATCATGTGCGTGGGCGGCATCCTGATGGCGCTCGACCAGGACGTGCCGCTGTCCGCCCTG
CTGCTCGTCATCGTGCCCGTCCTCGGCGTGATCGTCTGGCGGATGCGGCCGATCTTCCGCGGCGTGCAGGACCGCATCGA
CACCGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCATCCGCGTCATCCGCGCCTTCGTCCGCGACACCCACGAGCGGG
AACGTTTCGACGGCGCGAACGCCGAGCTCATGGACGTCTCGCTCAAGGCCGGCCGGCTGATGTCGCTGATGTTCCCGTCC
GTGATGCTGGTCGTGAACCTCTCCTCCATCGCCGTGCTCTGGTTCGGCGGCCACCGCATCGAGAGCGGCGACATGGAGAT
CGGCGCGCTGACGGCCTTCCTCAGCTACCTGATGCAGATCCTGATGGCCGTCATGATGGCCACCTTCATGTTCATGATGG
TGCCGCGCGCCGAGGTCTGCGCCGAGCGCGTCCAGGAGGTCCTCGCCACCGACTCCAGCGTGGTGCCGCCGGCGAACCCG
GTCACCGCGCTGCGCGGCGGCGGGCACCTGGAGCTCAGCGGCGTCGAGTTCCGCTACCCGGGCGCGGAGGAGCCGGTCCT
CAAGGACATCTCGCTCGTGGCCCGGCCCGGTGAGATCACGGCCGTCATCGGCTCCACCGGCAGCGGCAAGTCCACGCTGC
TGGGGCTGATCCCGAGGCTCTTCGACGCGACCGCCGGAACGGTCACCGTCGGGGGCGTCGACGTCCGCGAGCTCGACCCC
GCCCGCTCCGCCGAGGCCGTCGGCCTCGTCCCGCAGAAGCCCTACCTCTTCTCCGGGACCGTCGCCTCCAACCTCCGCTA
CGGGCGCCCCGACGCGACCGACGAGGAGCTGTGGGCGGCGCTGGAGACCGCGCAGGCCCGCGACTTCGTCGAGGGCATGG
ACGGCGGCCTGGAGGCGCCGATCGCGCAGGGCGGCACCAACGTCTCCGGCGGGCAGCGGCAGCGCCTCGCCATAGCCCGC
GCCCTGGTCCGCAAGCCCGACATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGACGCCCGGCTGCG
GGCCGCGCTGGCCCGCGAGACGGGGAACGCCACGGTCGTCATCGTCGCCCAGCGCGTCTCCACGATCCGCGACGCCGACC
GCATCGTCGTCCTGGACGAGGGCCGCGTCGTCGGCACCGGCACCCACGGCGAGCTGATGGCCGGCAACGAGACCTACCGG
GAGATCGTGCTCTCCCAGCTCACCGAGGAGGAGGCGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-284)

ABC transporter (ABC_tran)

(347-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.31

100

0.398