Detailed information NTG0782202

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: PPW95_RS23220
• Genome accession: NZ_CP117039
• Coordinates: 3124297..3125304 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain VP220218
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3119297..3130304

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PPW95_RS23200 (PPW95_23200)	rplC	3119831..3120460 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
PPW95_RS23205 (PPW95_23205)	rpsJ	3120475..3120786 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
PPW95_RS23210 (PPW95_23210)	rpmE	3121244..3121465 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
PPW95_RS23215 (PPW95_23215)	priA	3121760..3123964 (+)	2205	WP_029805229.1	primosomal protein N'	-
PPW95_RS23220 (PPW95_23220)	cytR	3124297..3125304 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
PPW95_RS23225 (PPW95_23225)	ftsN	3125481..3126026 (+)	546	WP_005489623.1	cell division protein FtsN	-
PPW95_RS23230 (PPW95_23230)	hslV	3126190..3126741 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
PPW95_RS23235 (PPW95_23235)	hslU	3126765..3128096 (+)	1332	WP_031856197.1	HslU--HslV peptidase ATPase subunit	-
PPW95_RS23240 (PPW95_23240)	-	3128521..3128745 (-)	225	WP_005489715.1	hypothetical protein	-
PPW95_RS23245 (PPW95_23245)	-	3128905..3129054 (-)	150	WP_005489496.1	AlpA family phage regulatory protein	-
PPW95_RS23250 (PPW95_23250)	radC	3129222..3129695 (+)	474	WP_005489555.1	RadC family protein	-
PPW95_RS23255 (PPW95_23255)	-	3129692..3130123 (+)	432	WP_005489473.1	DUF2787 family protein	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=782202 PPW95_RS23220 WP_005481416.1 3124297..3125304(+) (cytR) [Vibrio parahaemolyticus strain VP220218]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=782202 PPW95_RS23220 WP_005481416.1 3124297..3125304(+) (cytR) [Vibrio parahaemolyticus strain VP220218]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAGCTTGGCCATAAACGCATAGCACAAATTTCAGGACCAGATAC
AGCGGTATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGTGTTCCACAAGATCT
GTCGGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTTCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904