Detailed information NTG0782180

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PPW95_RS11110
• Genome accession: NZ_CP117039
• Coordinates: 582966..583955 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain VP220218
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 577966..588955

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PPW95_RS11075 (PPW95_11075)	ftsB	577974..578255 (+)	282	WP_005455577.1	cell division protein FtsB	-
PPW95_RS11080 (PPW95_11080)	ispD	578257..578961 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PPW95_RS11085 (PPW95_11085)	ispF	578979..579455 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PPW95_RS11090 (PPW95_11090)	truD	579502..580545 (+)	1044	WP_021450029.1	tRNA pseudouridine(13) synthase TruD	-
PPW95_RS11095 (PPW95_11095)	surE	580545..581321 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
PPW95_RS11100 (PPW95_11100)	-	581321..581947 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PPW95_RS11105 (PPW95_11105)	-	581962..582885 (+)	924	WP_021486791.1	peptidoglycan DD-metalloendopeptidase family protein	-
PPW95_RS11110 (PPW95_11110)	rpoS	582966..583955 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
PPW95_RS11115 (PPW95_11115)	mutS	584035..586596 (-)	2562	WP_085577166.1	DNA mismatch repair protein MutS	-
PPW95_RS11120 (PPW95_11120)	pncC	586681..587163 (+)	483	WP_005455551.1	nicotinamide-nucleotide amidase	-
PPW95_RS11125 (PPW95_11125)	recA	587364..588407 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=782180 PPW95_RS11110 WP_005478537.1 582966..583955(+) (rpoS) [Vibrio parahaemolyticus strain VP220218]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=782180 PPW95_RS11110 WP_005478537.1 582966..583955(+) (rpoS) [Vibrio parahaemolyticus strain VP220218]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCTGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851