Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   PPW95_RS02555 Genome accession   NZ_CP117038
Coordinates   595604..596701 (-) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain VP220218     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 590604..601701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPW95_RS02540 (PPW95_02540) - 591268..592323 (-) 1056 WP_025623626.1 HlyD family secretion protein -
  PPW95_RS02545 (PPW95_02545) - 592361..592816 (-) 456 WP_025525184.1 MarR family transcriptional regulator -
  PPW95_RS02550 (PPW95_02550) luxQ 593028..595604 (-) 2577 WP_025521028.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  PPW95_RS02555 (PPW95_02555) luxP 595604..596701 (-) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  PPW95_RS02560 (PPW95_02560) - 597053..597373 (-) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  PPW95_RS02565 (PPW95_02565) - 597370..598020 (-) 651 WP_005499314.1 YceH family protein -
  PPW95_RS02570 (PPW95_02570) - 598197..598412 (-) 216 WP_005477197.1 hypothetical protein -
  PPW95_RS02575 (PPW95_02575) - 598740..599054 (+) 315 WP_005453573.1 DUF496 family protein -
  PPW95_RS02580 (PPW95_02580) - 599177..600514 (+) 1338 WP_031856089.1 MATE family efflux transporter -
  PPW95_RS02585 (PPW95_02585) - 600588..601565 (-) 978 WP_015313433.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=782164 PPW95_RS02555 WP_005463467.1 595604..596701(-) (luxP) [Vibrio parahaemolyticus strain VP220218]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=782164 PPW95_RS02555 WP_005463467.1 595604..596701(-) (luxP) [Vibrio parahaemolyticus strain VP220218]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGCCCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTAAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGTGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCTGGGTATGAAGCTGCAAAAGCCAGTTTGAAAAAATACCCAGATGTGGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTAATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644