Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   LYZ37_RS19605 Genome accession   NZ_CP117030
Coordinates   929742..930839 (-) Length   365 a.a.
NCBI ID   WP_272787248.1    Uniprot ID   -
Organism   Vibrio tubiashii strain FP17     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 924742..935839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS19585 (LYZ37_19585) - 925304..925465 (+) 162 WP_004743716.1 hypothetical protein -
  LYZ37_RS19590 (LYZ37_19590) - 925519..925800 (+) 282 WP_004743717.1 hypothetical protein -
  LYZ37_RS19595 (LYZ37_19595) - 925889..927148 (+) 1260 WP_272787246.1 hydroxymethylglutaryl-CoA reductase -
  LYZ37_RS19600 (LYZ37_19600) luxQ 927196..929742 (-) 2547 WP_272787247.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  LYZ37_RS19605 (LYZ37_19605) luxP 929742..930839 (-) 1098 WP_272787248.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  LYZ37_RS19610 (LYZ37_19610) - 930987..932144 (-) 1158 WP_272787249.1 conjugal transfer protein TraF -
  LYZ37_RS19615 (LYZ37_19615) - 932230..932532 (-) 303 WP_272787250.1 GIY-YIG nuclease family protein -
  LYZ37_RS19620 (LYZ37_19620) - 932532..933185 (-) 654 WP_272787251.1 YceH family protein -
  LYZ37_RS19625 (LYZ37_19625) - 933220..933414 (-) 195 WP_272787252.1 hypothetical protein -
  LYZ37_RS19630 (LYZ37_19630) - 933600..933917 (+) 318 WP_004743727.1 DUF496 family protein -
  LYZ37_RS19635 (LYZ37_19635) - 934224..934463 (+) 240 WP_174263834.1 YgjV family protein -
  LYZ37_RS19640 (LYZ37_19640) - 934531..935682 (-) 1152 WP_272787253.1 HD-GYP domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41300.51 Da        Isoelectric Point: 5.6593

>NTDB_id=782132 LYZ37_RS19605 WP_272787248.1 929742..930839(-) (luxP) [Vibrio tubiashii strain FP17]
MSKKAILPILVLCSFSASAHTTQVLNGYWQYDEYLEAHPTQKELTEQLSQTVRKYPTPLVAQQTSPVSISVVYPGQQVSD
YWSRNIKAFEMRLEKLGVDYEINQVFTRPSVDVRQQSLSLLEAVQNKADYLIFTLDTTRHRKFIEHVLSSTDTKLILQNI
TTPVRAWDEQQPFMYVGFDHIKGTRVIEGYYKNIVPKDSRYSVLYFSEGYVSDARGDTFIEEMSHHDTYKLSSSFYTKAT
RDSGYETAKIALNRDPDIQFIYACSTDVALGAADALAELGRQDVLLNGWGGGTAELKAIGEGALNVTAMRMNDDTGIAMA
EAIKWDLEGRSVPHVYSGDFELVTNKDSSARIEKLKQRAFRYSDQ

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=782132 LYZ37_RS19605 WP_272787248.1 929742..930839(-) (luxP) [Vibrio tubiashii strain FP17]
ATGTCTAAAAAAGCAATATTGCCAATACTGGTATTGTGCTCATTTTCAGCTTCGGCTCATACCACGCAGGTCCTGAACGG
TTACTGGCAGTATGACGAGTATCTAGAAGCACACCCAACACAGAAAGAACTGACTGAACAGCTCAGTCAAACGGTTAGAA
AGTACCCAACCCCTCTTGTGGCGCAACAAACTTCTCCTGTCTCTATATCTGTGGTCTATCCAGGCCAGCAGGTCTCAGAC
TATTGGAGTCGTAATATAAAGGCGTTCGAGATGCGTCTAGAAAAGCTTGGGGTGGACTACGAAATTAATCAGGTGTTTAC
GCGTCCTAGTGTCGATGTTAGGCAGCAAAGCTTGTCTCTATTAGAGGCCGTTCAAAATAAGGCTGATTACCTTATTTTCA
CTCTTGATACCACGCGGCATCGTAAGTTCATCGAGCATGTATTGAGTTCGACGGACACCAAATTGATTCTGCAAAACATC
ACGACGCCGGTAAGGGCATGGGATGAACAACAACCTTTTATGTACGTGGGATTTGACCATATCAAAGGCACACGCGTTAT
AGAGGGGTATTACAAGAATATTGTCCCTAAAGATAGCCGCTATTCTGTTCTCTATTTCTCTGAGGGTTATGTTAGTGATG
CGCGAGGCGATACTTTTATCGAAGAGATGAGTCACCACGACACGTATAAACTATCTTCCTCGTTTTACACAAAGGCAACA
CGAGATTCAGGCTATGAAACGGCCAAGATTGCACTTAACCGAGATCCAGATATTCAGTTTATTTACGCTTGTTCAACGGA
TGTCGCGCTCGGCGCTGCAGATGCACTAGCGGAGTTAGGTCGACAAGATGTTTTGCTTAATGGTTGGGGTGGAGGCACAG
CCGAACTAAAAGCGATAGGTGAGGGGGCTTTAAATGTCACCGCTATGCGCATGAATGATGATACGGGTATTGCGATGGCA
GAAGCGATCAAATGGGATCTTGAAGGACGTAGTGTACCTCACGTGTACTCAGGCGATTTTGAACTAGTAACAAATAAAGA
CAGTTCGGCTCGTATCGAGAAGCTTAAGCAACGTGCTTTTAGGTATTCTGATCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.74

100

0.627