Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LYZ37_RS12645 Genome accession   NZ_CP117029
Coordinates   2759812..2760330 (-) Length   172 a.a.
NCBI ID   WP_272785708.1    Uniprot ID   -
Organism   Vibrio tubiashii strain FP17     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2754812..2765330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS12620 (LYZ37_12620) - 2755018..2755425 (-) 408 WP_272785704.1 VOC family protein -
  LYZ37_RS12625 (LYZ37_12625) - 2755630..2757405 (-) 1776 WP_272785705.1 methyl-accepting chemotaxis protein -
  LYZ37_RS12635 (LYZ37_12635) - 2758377..2759147 (+) 771 WP_272785706.1 substrate-binding periplasmic protein -
  LYZ37_RS12640 (LYZ37_12640) - 2759271..2759747 (+) 477 WP_272785707.1 RDD family protein -
  LYZ37_RS12645 (LYZ37_12645) luxS 2759812..2760330 (-) 519 WP_272785708.1 S-ribosylhomocysteine lyase Regulator
  LYZ37_RS12650 (LYZ37_12650) - 2760355..2760954 (-) 600 WP_038197165.1 hypothetical protein -
  LYZ37_RS12655 (LYZ37_12655) gshA 2760964..2762532 (-) 1569 WP_272785709.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19058.79 Da        Isoelectric Point: 4.6153

>NTDB_id=782117 LYZ37_RS12645 WP_272785708.1 2759812..2760330(-) (luxS) [Vibrio tubiashii strain FP17]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRNHLNGDAVEIIDISP
MGCRTGFYMSLIGTPQEQQVADAWLSAMQDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAEAILAAGVSVNRNDELA
LPEEMLKELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=782117 LYZ37_RS12645 WP_272785708.1 2759812..2760330(-) (luxS) [Vibrio tubiashii strain FP17]
ATGCCGTTACTAGATAGTTTTACCGTAGACCACACACGTATGAATGCACCTGCCGTTCGTGTGGCAAAGACCATGACGAC
ACCAAAAGGTGACACCATTACGGTGTTTGATCTACGCTTTACCGCACCAAATAAAGATATCCTGTCAGAAAGAGGTATTC
ACACTCTAGAGCACCTTTACGCGGGCTTTATGCGTAATCACTTGAATGGTGATGCTGTAGAAATTATCGATATTTCTCCA
ATGGGCTGTCGTACAGGTTTTTACATGAGCCTGATTGGTACGCCGCAAGAGCAGCAAGTTGCCGATGCTTGGCTATCTGC
AATGCAAGATGTGTTAAAAGTTGAAAGCCAGAACAAAATCCCAGAGCTGAATGAGTACCAATGTGGTACGGCGGCTATGC
ACTCGCTAGATGAAGCGAAACAGATTGCTGAAGCTATTCTTGCTGCCGGAGTTTCAGTTAACAGAAATGATGAGCTAGCG
CTGCCTGAAGAGATGCTAAAAGAGCTTAAAATAGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878