Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LYZ37_RS10490 Genome accession   NZ_CP117029
Coordinates   2314122..2315516 (-) Length   464 a.a.
NCBI ID   WP_272785458.1    Uniprot ID   -
Organism   Vibrio tubiashii strain FP17     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2309122..2320516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS10455 (LYZ37_10455) moaE 2309838..2310299 (-) 462 WP_272785453.1 molybdopterin synthase catalytic subunit MoaE -
  LYZ37_RS10460 (LYZ37_10460) moaD 2310302..2310547 (-) 246 WP_272785454.1 molybdopterin synthase sulfur carrier subunit -
  LYZ37_RS10465 (LYZ37_10465) moaC 2310544..2311023 (-) 480 WP_069666900.1 cyclic pyranopterin monophosphate synthase MoaC -
  LYZ37_RS10470 (LYZ37_10470) moaB 2311039..2311551 (-) 513 WP_004748419.1 molybdenum cofactor biosynthesis protein B -
  LYZ37_RS10475 (LYZ37_10475) moaA 2311628..2312617 (-) 990 WP_272785455.1 GTP 3',8-cyclase MoaA -
  LYZ37_RS10480 (LYZ37_10480) - 2312908..2313795 (+) 888 WP_272785456.1 YvcK family protein -
  LYZ37_RS10485 (LYZ37_10485) luxU 2313781..2314122 (-) 342 WP_004748414.1 quorum-sensing phosphorelay protein LuxU -
  LYZ37_RS10490 (LYZ37_10490) luxO 2314122..2315516 (-) 1395 WP_272785458.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  LYZ37_RS10495 (LYZ37_10495) uvrB 2315778..2317808 (-) 2031 WP_272785459.1 excinuclease ABC subunit UvrB -
  LYZ37_RS10505 (LYZ37_10505) - 2318749..2319477 (-) 729 WP_272785461.1 UTRA domain-containing protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51616.93 Da        Isoelectric Point: 5.7841

>NTDB_id=782116 LYZ37_RS10490 WP_272785458.1 2314122..2315516(-) (luxO) [Vibrio tubiashii strain FP17]
MQYNTQAKNSKYLLMVEDTASVAALYRSYLTPLQIDINIVGTGRDAIDSLNFRTPDLILLDLRLPDMTGMDVLHAVKEKN
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNALRKANKLKNDGDNPGSQGYQGFIGSSQTMQAVYRT
IDSAATSKASIFITGESGTGKEVCAEAIHATSKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNKDPWKEVEEGRFREDLYYRLYVIPLHLPPLRE
RGDDIIEIAYSLLGFMSKEEGKDFVRLAPEVVDRFSRYEWPGNVRQLQNVLRNVVVLNNGREIDLAMLPPPLNQPSKNEI
RVTRPQNETVSVQDIFPLWLTEKNAIEQAIKACDGNIPKAAGYLDVSPSTIYRKLQAWNAKEVQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=782116 LYZ37_RS10490 WP_272785458.1 2314122..2315516(-) (luxO) [Vibrio tubiashii strain FP17]
ATGCAATATAATACACAAGCAAAAAACTCAAAGTATTTGTTGATGGTTGAAGATACCGCCTCTGTAGCGGCGCTGTATCG
TTCTTATCTCACGCCACTTCAAATCGATATCAACATCGTCGGCACTGGCCGAGATGCCATTGATAGCCTCAATTTCAGAA
CCCCTGACCTTATCCTGCTCGATCTCCGATTACCTGATATGACTGGTATGGACGTCTTGCATGCGGTGAAAGAAAAGAAC
CCGGATGTGCCCGTCATTTTTATGACTGCGCATGGTTCGATTGATACCGCCGTAGAAGCAATGCGTCATGGCGCGCAAGA
CTTCCTAATTAAACCCTGTGAAGCTGATCGACTCCGTGTAACGGTTAATAATGCTCTGCGTAAAGCGAACAAGCTGAAAA
ACGATGGTGATAACCCGGGAAGTCAGGGTTATCAAGGCTTTATCGGCAGTAGTCAAACAATGCAGGCGGTATACAGAACC
ATAGACTCGGCGGCGACGAGTAAAGCCAGTATTTTTATCACTGGTGAAAGTGGTACAGGTAAAGAAGTATGTGCGGAAGC
AATTCACGCCACCAGTAAGCGCGGTGACAAACCGTTTATTGCCATCAACTGTGCTGCCATCCCAAAAGATTTGATTGAAA
GTGAGCTATTTGGTCACGTCAAAGGCGCATTTACTGGCGCTGCAACGGATCGCCAAGGCGCGGCGGAGCTTGCTGATGGC
GGCACGCTTTTCCTTGATGAGCTGTGTGAAATGGACTTAGATTTGCAAACTAAGCTGTTACGTTTTATTCAAACCGGTAC
CTTCCAGAAAGTGGGTTCGTCGAAGATGAAGAGCGTGGACGTACGTTTTGTTTGTGCAACCAATAAAGATCCTTGGAAAG
AAGTCGAAGAAGGGCGCTTCCGCGAAGATTTGTACTATCGTTTGTATGTTATCCCTCTTCATTTGCCACCTTTGCGTGAG
CGCGGTGACGATATTATTGAAATTGCCTATTCACTACTGGGTTTCATGTCTAAGGAAGAGGGTAAAGATTTTGTTCGTTT
AGCGCCTGAGGTTGTCGATCGTTTCTCGCGCTACGAATGGCCGGGTAATGTACGTCAGTTGCAAAATGTCTTACGTAATG
TGGTGGTGTTAAACAACGGCCGTGAGATTGATTTAGCCATGTTGCCACCACCGCTCAATCAACCATCAAAAAATGAGATT
CGAGTGACGAGGCCGCAAAATGAAACAGTCTCAGTACAAGATATATTCCCTTTGTGGCTTACTGAGAAAAATGCCATTGA
ACAGGCGATAAAAGCGTGTGATGGTAACATACCGAAAGCTGCGGGCTATTTGGATGTAAGCCCATCAACCATTTACAGAA
AACTACAAGCGTGGAATGCCAAGGAAGTACAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.892

96.121

0.845