Detailed information NTG0782110

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: LYZ37_RS06440
• Genome accession: NZ_CP117029
• Coordinates: 1411292..1412716 (-)
• Length: 474 a.a.
• NCBI ID: WP_272786962.1
• Uniprot ID: -
• Organism: Vibrio tubiashii strain FP17
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1406292..1417716

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LYZ37_RS06420 (LYZ37_06420)	-	1407720..1408925 (+)	1206	WP_272786960.1	HD-GYP domain-containing protein	-
LYZ37_RS06425 (LYZ37_06425)	cdd	1408973..1409860 (-)	888	WP_272786961.1	cytidine deaminase	-
LYZ37_RS06430 (LYZ37_06430)	-	1410104..1410781 (-)	678	WP_239855689.1	CidB/LrgB family autolysis modulator	-
LYZ37_RS06435 (LYZ37_06435)	-	1410781..1411146 (-)	366	WP_069666187.1	CidA/LrgA family protein	-
LYZ37_RS06440 (LYZ37_06440)	sbcB	1411292..1412716 (-)	1425	WP_272786962.1	exodeoxyribonuclease I	Machinery gene
LYZ37_RS06445 (LYZ37_06445)	-	1413395..1414768 (-)	1374	WP_272786963.1	L-cystine transporter	-
LYZ37_RS06450 (LYZ37_06450)	-	1414958..1415644 (-)	687	WP_272786964.1	oxidoreductase	-
LYZ37_RS06455 (LYZ37_06455)	-	1416163..1416774 (+)	612	WP_272786965.1	flavin reductase family protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54703.12 Da
• Isoelectric Point: 4.9021

>NTDB_id=782110 LYZ37_RS06440 WP_272786962.1 1411292..1412716(-) (sbcB) [Vibrio tubiashii strain FP17]
MQQENQPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPAPEAALITGITPKTAENQGLSEP
EFIAKIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNRNSRWDLLDVMRACYALRPEGVNWPENDEGFI
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELIDIVNMTPLMHVSGMLGKECNY
TSWVVPVAWHPTNQNAVICVDLAKDPQALLDLDTEQLNERLYTKRSDLAPDELPVPVKLIHLNKCPILAPAKTLTAENAE
KIGIDREKCLENLALLRKHPEVREKLIGVYAIEREYEKNNDVDSMLYDGFFSPADKAAMNIIRETDPNNLSALDISFSDD
RIAPLLFRYRARNFPWTLDESEQQRWAAHCRDYFESRIEDYMLNLENLVHEHESDQKKIAILKSIYQYVQKRVS

Nucleotide

• Length: 1425 bp

>NTDB_id=782110 LYZ37_RS06440 WP_272786962.1 1411292..1412716(-) (sbcB) [Vibrio tubiashii strain FP17]
ATGCAGCAAGAGAATCAGCCTACGTTTTTCTTTTTTGATTACGAGACGTGGGGAACTAGCCCAGCGAAAGATCGACCGTG
TCAGTTTGCGGGTGTTCGTACCGATATGGACTTCAATATTATTGGTGAACCTCTTGTTATTTATTGTCAGCCGCCTGCGG
ATTATCTTCCAGCACCGGAAGCCGCGCTAATTACAGGAATTACTCCGAAAACTGCGGAAAACCAAGGCCTATCTGAGCCC
GAGTTTATCGCAAAGATCCACGAACAACTGGCAACACCAAACACCATTAGCTTGGGCTATAACAGTATCCGATTCGATGA
TGAGGTAACGCGCTACACCTGTTACCGAAACTTTATCGACCCTTATGCGTGGAGCTGGCAAAACCGTAACTCTCGCTGGG
ATTTACTTGATGTCATGCGTGCTTGCTACGCGCTTCGTCCAGAAGGAGTAAACTGGCCTGAAAACGATGAAGGTTTTATC
AGCTTTAAGCTTGAGCATTTATCTGTAGCCAATGGCATTGAACATGAGAACGCACACGACGCGATGGCGGATGTTATCGC
GACGATTGAAATGGCCAAAAAGGTGAAAGCAGCTCAACCAAAGTTGTTTGATTACTTCCTAAGCATGCGTCACAAGCGCA
AGTTGAATGAGCTGATCGACATCGTGAACATGACACCCTTGATGCATGTTTCAGGAATGTTGGGCAAAGAGTGTAACTAC
ACTAGCTGGGTTGTTCCTGTTGCTTGGCACCCGACTAATCAAAACGCAGTTATTTGTGTCGATTTGGCGAAAGACCCACA
AGCCCTATTGGATTTGGATACCGAGCAGCTTAATGAGCGACTGTATACTAAGCGTTCTGACCTTGCGCCTGACGAGCTTC
CAGTCCCTGTTAAGCTTATCCATCTCAATAAGTGCCCTATTCTCGCTCCAGCGAAAACACTCACTGCGGAAAACGCAGAG
AAGATTGGCATTGACCGAGAGAAATGCCTAGAGAACTTAGCTCTGCTCCGCAAGCACCCTGAAGTTCGTGAAAAGCTGAT
TGGTGTTTATGCCATTGAGCGAGAATATGAAAAGAACAATGATGTCGATAGCATGCTCTACGATGGGTTCTTCTCTCCGG
CAGATAAAGCGGCGATGAACATCATTCGTGAAACTGACCCAAACAATCTATCTGCGCTTGATATTTCATTTAGTGATGAC
CGCATTGCGCCATTGCTGTTCCGTTATCGCGCGCGAAACTTCCCGTGGACGCTCGATGAGTCAGAACAACAGCGATGGGC
TGCGCACTGTCGTGACTACTTCGAAAGTCGTATTGAAGACTACATGCTAAATTTGGAAAACTTAGTTCACGAACATGAAA
GTGACCAAAAGAAAATCGCTATTTTAAAATCTATCTACCAATACGTACAAAAGCGAGTATCCTAG

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	78.981	99.367	0.785