Detailed information NTG0782104

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: LYZ37_RS02410
• Genome accession: NZ_CP117029
• Coordinates: 507629..511015 (-)
• Length: 1128 a.a.
• NCBI ID: WP_272786308.1
• Uniprot ID: -
• Organism: Vibrio tubiashii strain FP17
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 502629..516015

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LYZ37_RS02395 (LYZ37_02395)	-	503106..504131 (-)	1026	WP_004742645.1	ABC transporter permease	-
LYZ37_RS02400 (LYZ37_02400)	-	504134..505120 (-)	987	WP_069667556.1	ABC transporter permease	-
LYZ37_RS02405 (LYZ37_02405)	-	505293..506975 (-)	1683	WP_004742647.1	ABC transporter substrate-binding protein	-
LYZ37_RS02410 (LYZ37_02410)	chiS	507629..511015 (-)	3387	WP_272786308.1	response regulator	Regulator
LYZ37_RS02415 (LYZ37_02415)	rsmC	511225..512247 (-)	1023	WP_272786310.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
LYZ37_RS02420 (LYZ37_02420)	-	512342..513427 (-)	1086	WP_171324633.1	AI-2E family transporter	-
LYZ37_RS02425 (LYZ37_02425)	hemL	513692..514984 (-)	1293	WP_272786311.1	glutamate-1-semialdehyde 2,1-aminomutase	-
LYZ37_RS02430 (LYZ37_02430)	erpA	515236..515577 (+)	342	WP_004742653.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127145.39 Da
• Isoelectric Point: 5.6571

>NTDB_id=782104 LYZ37_RS02410 WP_272786308.1 507629..511015(-) (chiS) [Vibrio tubiashii strain FP17]
MFKFYRKQKFKRLQSTLMLAFLVLSITPLTVIAIFFLQSHTQDLQEQSTSHLTSVRDSKRQQVIDYLYAKESEVMGFVRS
ELAYASGGRFYGLVNAFSSLGLDIEQAREYAQRRYIQGSGDQIKTSILPQSSVYNGTERYRLLHKRYHWAYLELLKRSDF
DDILLVDREGNVTYSIYKHDNFGTNLLTGKYKDDNLGKTFAKLRNLVNDKRKTNEDFTPLIISDFSSEQGKPVAWLGAPI
IQQGYLHSYAMFRLPNNGITKLVADKSNLVSMKTLLVGSDHQSRTLAYQQEDIDKSRQVVDLALTGASDVGTYTNTENEA
IIAAYSPISFKGIDWAIVVEVPESVAFARVHQLETLFIFAMLTAILLVVMASHYLSNFITSPLLQLTWAAEKVSAGDLDA
DMNNTQRKDEIGRLAISFERMQRSIREKILLIKQQNEELESNLQLIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALASGANGPITSEHKYQLDIIINSGQRLATLVDDLLDYHKMRYGNLDIETSAVDLAGSTRLVLELSSHLIGSKPLRI
INQVPDEPVWVSADPQRLEQVLYNLVGNAIKYTSEGKIVISASVVDDNIRVQVVDTGQGIPADQLDHIFEPLIQAGSDAS
RYRQGAGLGLSISRQLIELMQGTLYVSSQPMVGTTFSFTLPIANTEQIEQANHYESAHFRAPNSGEIELEEPASLPENPD
GPLLLVVDDEPVNLRVLDSFLRLEGYRVRTAKDGHEALEAISKEKPELLLLDIMMPGMSGYQVCETLRETYDHAQLPVIM
LTALNQTDDRVRGFNSGANDYLSKPFNKQELAARIVAHLTASKAEQRRIENQQLHQELKHRAIVEASLLETQGRLLEQLE
TAPEAIVCVREDNKIRFANEAASRLFKRSTEQLKRSSADEIIAPKFLNVEQEHYCGTIDVYVEDVRQHLSADILKLPEGA
GLRSMYIFNVGGGINAARINNLETAIEALSSFAFEGDKAKLQELKELGGEFTRLADRATSDNKSKQEVMREVLVEAMTNA
LIYWESVTGQTKFAFAEQSGLWRVYLDRSTLQTRTLDKYLRPETLPKTPRWRTVLSSLDYILEHCNEQSPERTHIEGLRD
KLQHLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=782104 LYZ37_RS02410 WP_272786308.1 507629..511015(-) (chiS) [Vibrio tubiashii strain FP17]
ATGTTTAAGTTTTATCGAAAACAGAAGTTTAAACGCCTTCAGAGTACCTTAATGCTGGCATTTTTAGTGTTGAGTATTAC
CCCTCTGACGGTTATTGCGATCTTTTTCTTACAATCCCACACTCAAGATCTTCAAGAGCAAAGTACCTCACACCTCACCT
CGGTTCGAGATAGTAAGCGCCAACAAGTGATCGATTACTTATACGCCAAGGAATCTGAGGTAATGGGCTTCGTCCGTTCG
GAATTAGCCTATGCCAGTGGCGGACGTTTCTATGGCTTGGTCAACGCATTTAGCAGCTTAGGTTTGGATATTGAGCAAGC
TCGTGAGTACGCTCAGCGTCGTTATATCCAAGGTTCAGGCGACCAAATTAAAACCTCAATCTTACCTCAGTCCAGTGTCT
ACAACGGTACAGAGCGCTACCGCCTACTCCACAAACGTTATCACTGGGCATATCTAGAGCTTCTAAAGCGCTCTGATTTT
GATGACATTCTACTTGTCGATAGAGAAGGTAATGTCACTTACTCGATCTACAAGCATGATAACTTTGGAACTAACCTGCT
GACGGGTAAATACAAAGACGATAATTTAGGTAAAACCTTCGCTAAGCTGCGTAATCTGGTTAACGATAAACGCAAAACCA
ATGAAGATTTTACCCCTCTGATTATTTCTGACTTCTCTAGCGAGCAGGGAAAACCCGTAGCTTGGCTTGGTGCGCCTATA
ATCCAGCAAGGCTATTTGCACAGTTATGCGATGTTCAGGTTGCCAAATAATGGCATCACCAAACTGGTCGCCGACAAGAG
CAATCTGGTGTCGATGAAGACGTTACTAGTCGGCTCCGATCATCAATCACGCACCCTTGCCTACCAACAAGAAGATATTG
ATAAAAGCCGTCAAGTGGTCGACCTTGCACTTACAGGTGCAAGCGACGTAGGCACTTATACTAATACCGAAAATGAAGCG
ATTATTGCCGCATACAGCCCAATTTCCTTTAAAGGCATTGACTGGGCGATTGTGGTAGAAGTGCCAGAAAGCGTCGCCTT
CGCCCGTGTCCACCAGCTCGAAACCCTATTTATCTTCGCCATGCTTACTGCCATTCTTTTGGTTGTTATGGCCTCGCATT
ATTTGTCGAACTTCATCACCTCACCGCTGCTACAACTGACTTGGGCAGCAGAAAAAGTGTCGGCAGGCGATCTTGATGCC
GACATGAACAACACTCAGCGCAAAGACGAAATCGGGCGCTTAGCGATCAGCTTCGAGCGGATGCAACGCTCCATTAGAGA
GAAGATCCTGCTGATCAAACAGCAGAATGAAGAGCTAGAAAGTAATCTTCAACTGATCCAGAAGCAAAATGAAGAGCTGC
AATTGGCGAATAAACTCAAAGATGAGTTCTTGGCCACCACCTCTCATGAACTACGCACACCACTTCATGGCATGGTCGGT
ATTGCTGAAGCGCTCGCCTCTGGCGCTAATGGCCCAATCACCTCTGAACATAAGTATCAGCTCGATATCATCATCAATAG
TGGTCAGCGTTTAGCAACCTTGGTTGATGATCTGCTCGACTATCATAAGATGCGCTATGGCAATCTAGATATCGAGACCA
GTGCCGTCGATTTAGCAGGTTCTACTCGCTTGGTATTGGAACTCTCTTCTCACCTTATTGGCTCCAAGCCTCTGCGGATC
ATTAATCAGGTTCCTGACGAACCAGTCTGGGTTAGCGCCGATCCGCAACGACTAGAGCAAGTTTTATATAACTTGGTCGG
CAATGCGATTAAATACACAAGCGAAGGGAAGATCGTTATCTCTGCCAGTGTGGTAGATGACAACATTCGCGTTCAAGTGG
TCGATACAGGGCAAGGCATTCCAGCGGATCAACTTGACCACATCTTTGAACCGCTTATTCAAGCAGGAAGCGACGCGAGT
CGTTATCGTCAGGGAGCGGGATTGGGCTTGTCGATTAGCCGTCAGCTAATTGAACTAATGCAAGGTACGCTCTATGTCAG
CAGTCAACCTATGGTTGGAACCACCTTTAGTTTCACACTGCCAATCGCCAATACAGAGCAAATTGAGCAAGCAAACCATT
ATGAATCCGCTCATTTTAGAGCGCCAAACTCTGGTGAGATTGAACTAGAGGAGCCAGCAAGCTTACCTGAAAATCCAGAC
GGCCCACTATTACTTGTCGTCGACGACGAACCCGTAAACTTACGGGTACTGGATAGTTTCTTACGCCTAGAAGGCTATCG
TGTTCGAACCGCGAAAGATGGTCATGAAGCGCTTGAAGCCATCAGTAAAGAAAAACCTGAGCTGCTGCTGCTGGATATCA
TGATGCCGGGAATGAGTGGCTACCAAGTGTGTGAAACTCTACGCGAGACCTACGATCATGCACAACTGCCCGTGATCATG
CTAACCGCTTTAAACCAAACTGATGATCGGGTTCGCGGCTTTAACTCGGGTGCCAACGACTACCTATCCAAGCCATTTAA
CAAGCAAGAGTTGGCTGCTCGTATTGTCGCTCATCTCACCGCTAGCAAAGCGGAACAGCGTCGAATCGAAAATCAGCAGC
TGCATCAAGAGCTAAAACATCGGGCAATCGTCGAAGCGAGTTTACTTGAGACACAAGGCCGACTACTTGAGCAACTTGAG
ACCGCTCCAGAGGCCATTGTCTGTGTACGAGAAGACAATAAGATTCGCTTCGCCAACGAGGCGGCATCAAGACTGTTTAA
ACGCTCAACCGAACAGCTAAAACGTTCAAGCGCCGACGAAATCATTGCGCCTAAGTTCCTTAACGTGGAACAAGAACACT
ACTGCGGCACTATTGATGTCTATGTAGAAGATGTAAGGCAACACCTGTCGGCGGATATCCTTAAGCTGCCTGAAGGAGCC
GGGCTACGCTCTATGTACATATTTAATGTGGGTGGCGGTATCAATGCAGCGCGTATTAACAACCTAGAAACCGCAATTGA
AGCGTTATCTAGCTTCGCTTTTGAAGGGGATAAAGCAAAACTGCAGGAGCTTAAAGAGCTAGGTGGAGAATTTACTCGCT
TGGCAGACCGAGCAACAAGCGACAACAAATCAAAACAAGAGGTGATGCGCGAAGTATTGGTAGAAGCGATGACCAACGCG
CTTATTTATTGGGAATCGGTAACAGGCCAAACTAAGTTTGCTTTTGCTGAGCAAAGCGGTTTGTGGCGCGTGTATCTCGA
CCGAAGTACACTGCAAACCCGTACCTTGGACAAATACCTCCGACCGGAAACCCTACCTAAGACTCCGCGCTGGAGAACCG
TATTAAGCTCTCTCGATTACATTCTTGAGCACTGTAATGAACAAAGTCCAGAGAGAACCCACATAGAAGGATTACGCGAT
AAATTGCAGCATTTGCTCACCAGCTAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Response regulator receiver domain (Response_reg) (725-835)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-682)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	79.344	100	0.793