Detailed information NTG0782098

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LYZ37_RS02120
• Genome accession: NZ_CP117029
• Coordinates: 436019..436993 (+)
• Length: 324 a.a.
• NCBI ID: WP_004742589.1
• Uniprot ID: F9SZN7
• Organism: Vibrio tubiashii strain FP17
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 431019..441993

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LYZ37_RS02085 (LYZ37_02085)	ftsB	431088..431366 (+)	279	WP_004742582.1	cell division protein FtsB	-
LYZ37_RS02090 (LYZ37_02090)	ispD	431367..432071 (+)	705	WP_272786268.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
LYZ37_RS02095 (LYZ37_02095)	ispF	432075..432551 (+)	477	WP_272786269.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LYZ37_RS02100 (LYZ37_02100)	truD	432605..433651 (+)	1047	WP_272786270.1	tRNA pseudouridine(13) synthase TruD	-
LYZ37_RS02105 (LYZ37_02105)	surE	433648..434406 (+)	759	WP_272786271.1	5'/3'-nucleotidase SurE	-
LYZ37_RS02110 (LYZ37_02110)	-	434409..435035 (+)	627	WP_239826767.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
LYZ37_RS02115 (LYZ37_02115)	nlpD	435038..435949 (+)	912	WP_272786272.1	murein hydrolase activator NlpD	-
LYZ37_RS02120 (LYZ37_02120)	rpoS	436019..436993 (+)	975	WP_004742589.1	RNA polymerase sigma factor RpoS	Regulator
LYZ37_RS02125 (LYZ37_02125)	-	437061..438332 (-)	1272	WP_272786273.1	HlyC/CorC family transporter	-
LYZ37_RS02130 (LYZ37_02130)	-	438461..439255 (-)	795	WP_004742591.1	cytochrome C assembly family protein	-
LYZ37_RS02135 (LYZ37_02135)	ffh	439464..440852 (+)	1389	WP_004742592.1	signal recognition particle protein	-
LYZ37_RS02140 (LYZ37_02140)	rpsP	441060..441308 (+)	249	WP_004742593.1	30S ribosomal protein S16	-
LYZ37_RS02145 (LYZ37_02145)	rimM	441338..441886 (+)	549	WP_004742594.1	ribosome maturation factor RimM	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37109.03 Da
• Isoelectric Point: 4.7232

>NTDB_id=782098 LYZ37_RS02120 WP_004742589.1 436019..436993(+) (rpoS) [Vibrio tubiashii strain FP17]
MSISNTATKVEEFEIGQETTETFQAVESAKPAQETKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDINNSDPEVS
TQDDDIKNSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMENLFS
VTED

Nucleotide

• Length: 975 bp

>NTDB_id=782098 LYZ37_RS02120 WP_004742589.1 436019..436993(+) (rpoS) [Vibrio tubiashii strain FP17]
ATGAGTATCAGCAATACAGCAACGAAAGTCGAAGAATTCGAAATCGGTCAAGAAACAACGGAAACGTTTCAAGCCGTAGA
ATCCGCAAAACCCGCACAAGAAACCAAAGAAGAGTTTGATGCATCGACCAAAAGTCTTGATGCAACCCAGCTTTACTTAG
GTGAAATTGGTTTTTCTCCACTACTTACCGCTGAAGAAGAAGTTCTTTATGCGCGTCGTGCCTTGCGAGGTGACGAAGCT
GCGCGTAAACGAATGATCGAAAGTAACCTTCGCTTAGTAGTGAAAATCTCACGTCGATACAGCAACCGTGGCCTAGCGCT
TCTTGATCTTATTGAAGAAGGGAATCTAGGATTGATCCGCGCGGTTGAGAAGTTCGACCCAGAGCGTGGTTTCAGATTCT
CTACCTACGCAACATGGTGGATTCGCCAAACCATTGAACGTGCATTAATGAATCAAACTCGCACGATTCGATTACCTATT
CACGTCGTCAAAGAGCTTAATATTTACCTGCGTACCGCTCGTGAACTTTCACAAAAACTTGACCATGAGCCTACTGCAGA
AGAGATAGCGACTCAGCTAGACAAGCCAGTCGATGATGTGAGTAAAATGCTCCGCCTTAATGAACGTATCAGCTCTGTTG
ATACACCCATTGGTGGTGATGGTGAAAAGGCTCTGCTTGATATCATTCCAGATATTAATAACTCAGACCCTGAAGTCTCA
ACTCAAGATGACGACATCAAAAACTCTCTAATCCATTGGTTAGATGAGCTTAATCCAAAGCAAAAAGAAGTTTTAGCGCG
TCGCTTTGGCCTACTTGGCTACGAGCCATCGACTCTTGAAGAGGTCGGTCGCGAGATTAATCTTACTCGTGAACGTGTTC
GTCAGATACAGGTAGAAGGTTTACGTCGCCTACGAGAGATATTGATCAAGCAGGGACTAAATATGGAAAACCTATTTAGT
GTCACTGAAGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (47-80)

• Sigma-70, region 4 (Sigma70_r4) (253-306)

• Sigma-70 region 2 (Sigma70_r2) (85-154)

• Sigma-70 region 3 (Sigma70_r3) (165-238)

3D structure

• AlphaFold DB: F9SZN7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.631	100	0.867