Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   PPK11_RS04955 Genome accession   NZ_CP117024
Coordinates   1044669..1045982 (-) Length   437 a.a.
NCBI ID   WP_273896061.1    Uniprot ID   -
Organism   Helicobacter pylori strain 444A6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1039669..1050982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPK11_RS04920 - 1039974..1040108 (-) 135 WP_273896044.1 hypothetical protein -
  PPK11_RS04925 nadC 1040132..1040953 (-) 822 WP_273896045.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PPK11_RS04930 nadA 1040953..1041963 (-) 1011 WP_273896046.1 quinolinate synthase NadA -
  PPK11_RS04935 - 1041953..1042756 (-) 804 WP_273896047.1 phosphatidylserine decarboxylase -
  PPK11_RS04940 - 1042750..1043256 (-) 507 WP_000953098.1 DUF6115 domain-containing protein -
  PPK11_RS04945 - 1043269..1043763 (-) 495 WP_181369743.1 hypothetical protein -
  PPK11_RS04950 mqnP 1043756..1044598 (-) 843 WP_273896060.1 menaquinone biosynthesis prenyltransferase MqnP -
  PPK11_RS04955 comEC/comE3 1044669..1045982 (-) 1314 WP_273896061.1 ComEC/Rec2 family competence protein Machinery gene
  PPK11_RS04960 - 1045979..1047445 (-) 1467 WP_273896062.1 replicative DNA helicase -
  PPK11_RS04965 - 1047456..1048856 (-) 1401 WP_273896063.1 NAD(P)H-hydrate dehydratase -
  PPK11_RS04970 crdS 1048859..1050061 (-) 1203 WP_273899219.1 copper-sensing histidine kinase CrdS -
  PPK11_RS04975 crdR 1050027..1050668 (-) 642 WP_001169790.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50105.09 Da        Isoelectric Point: 9.7934

>NTDB_id=782069 PPK11_RS04955 WP_273896061.1 1044669..1045982(-) (comEC/comE3) [Helicobacter pylori strain 444A6]
MKDKTFQGAFELLSTPKEYLWCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLSAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKSCSFLESLKSCFFQTYSFSLTRKQDFKSHARHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLVLACCIAIALLPKLLFSVGLLLSVCGVWYIFLFLKHTEIFFKTSSFLMRSLQIISLS
ALVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLTIPTISIPSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=782069 PPK11_RS04955 WP_273896061.1 1044669..1045982(-) (comEC/comE3) [Helicobacter pylori strain 444A6]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGTTTGAGCG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCACAATTTTTTGGCAAGATCAAATCTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
CACGCCACTTCATTGATAGCGCTCATTCCAACGCTTTGGTGGGTAATTTGTATCGAGCATTATTCATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTTTCGCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTACTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGGTTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGCTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACGGAAATTTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTCTTCAGATCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTAGATCCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.881

100

0.959