Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NL415_RS24255 Genome accession   NZ_CP117016
Coordinates   4878843..4879472 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MLI121     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4873843..4884472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL415_RS24235 (NL415_024240) ycbZ 4874232..4875992 (-) 1761 WP_000156477.1 Lon protease family protein -
  NL415_RS24240 (NL415_024245) matP 4876178..4876630 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NL415_RS24245 (NL415_024250) ompA 4876706..4877758 (-) 1053 WP_000750418.1 porin OmpA -
  NL415_RS24250 (NL415_024255) sulA 4878115..4878624 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NL415_RS24255 (NL415_024260) sxy/tfoX 4878843..4879472 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NL415_RS24260 (NL415_024265) yccS 4879435..4881597 (-) 2163 WP_000875041.1 YccS family putative transporter -
  NL415_RS24265 (NL415_024270) yccF 4881607..4882053 (-) 447 WP_001261235.1 YccF domain-containing protein -
  NL415_RS24270 (NL415_024275) helD 4882176..4884230 (+) 2055 WP_000420538.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=782033 NL415_RS24255 WP_000839153.1 4878843..4879472(+) (sxy/tfoX) [Escherichia coli strain MLI121]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=782033 NL415_RS24255 WP_000839153.1 4878843..4879472(+) (sxy/tfoX) [Escherichia coli strain MLI121]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1