Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NL414_RS16925 Genome accession   NZ_CP117013
Coordinates   3328925..3329554 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MLI114     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3323925..3334554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL414_RS16910 (NL414_016910) helD 3324167..3326221 (-) 2055 WP_000420538.1 DNA helicase IV -
  NL414_RS16915 (NL414_016915) yccF 3326344..3326790 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NL414_RS16920 (NL414_016920) yccS 3326800..3328962 (+) 2163 WP_000875041.1 YccS family putative transporter -
  NL414_RS16925 (NL414_016925) sxy/tfoX 3328925..3329554 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NL414_RS16930 (NL414_016930) sulA 3329773..3330282 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NL414_RS16935 (NL414_016935) ompA 3330639..3331691 (+) 1053 WP_000750418.1 porin OmpA -
  NL414_RS16940 (NL414_016940) matP 3331767..3332219 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NL414_RS16945 (NL414_016945) ycbZ 3332405..3334165 (+) 1761 WP_000156477.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=782002 NL414_RS16925 WP_000839153.1 3328925..3329554(-) (sxy/tfoX) [Escherichia coli strain MLI114]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=782002 NL414_RS16925 WP_000839153.1 3328925..3329554(-) (sxy/tfoX) [Escherichia coli strain MLI114]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1