Detailed information NTG0781996

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QUF37_RS02965
• Genome accession: NZ_CP130447
• Coordinates: 602290..603282 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 11899A_LBHALD
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 597290..608282

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUF37_RS02935 (QUF37_02935)	ispD	597351..598061 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QUF37_RS02940 (QUF37_02940)	ispF	598061..598540 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QUF37_RS02945 (QUF37_02945)	truD	598537..599586 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QUF37_RS02950 (QUF37_02950)	surE	599567..600328 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QUF37_RS02955 (QUF37_02955)	pcm	600322..600948 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QUF37_RS02960 (QUF37_02960)	nlpD	601133..602227 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QUF37_RS02965 (QUF37_02965)	rpoS	602290..603282 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QUF37_RS02970 (QUF37_02970)	ygbN	603376..604740 (-)	1365	WP_000104441.1	GntP family transporter	-
QUF37_RS02975 (QUF37_02975)	ygbM	604829..605605 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QUF37_RS02980 (QUF37_02980)	ygbL	605610..606248 (-)	639	WP_001278994.1	aldolase	-
QUF37_RS02985 (QUF37_02985)	otnK	606245..607507 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=781996 QUF37_RS02965 WP_000081550.1 602290..603282(+) (rpoS) [Escherichia coli strain 11899A_LBHALD]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=781996 QUF37_RS02965 WP_000081550.1 602290..603282(+) (rpoS) [Escherichia coli strain 11899A_LBHALD]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715