Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NL413_RS08900 Genome accession   NZ_CP117010
Coordinates   1714152..1714781 (+) Length   209 a.a.
NCBI ID   WP_000793792.1    Uniprot ID   A0A3T8SP29
Organism   Escherichia coli strain MLI110     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1709152..1719781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL413_RS08880 (NL413_008875) ycbZ 1709542..1711302 (-) 1761 WP_000156518.1 Lon protease family protein -
  NL413_RS08885 (NL413_008880) matP 1711488..1711940 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  NL413_RS08890 (NL413_008885) ompA 1712015..1713067 (-) 1053 WP_000750419.1 porin OmpA -
  NL413_RS08895 (NL413_008890) sulA 1713424..1713933 (-) 510 WP_059328751.1 SOS-induced cell division inhibitor SulA -
  NL413_RS08900 (NL413_008895) sxy/tfoX 1714152..1714781 (+) 630 WP_000793792.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NL413_RS08905 (NL413_008900) yccS 1714744..1716906 (-) 2163 WP_072146309.1 YccS family putative transporter -
  NL413_RS08910 (NL413_008905) yccF 1716916..1717362 (-) 447 WP_001261235.1 YccF domain-containing protein -
  NL413_RS08915 (NL413_008910) helD 1717485..1719539 (+) 2055 WP_000420537.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24174.04 Da        Isoelectric Point: 9.2180

>NTDB_id=781976 NL413_RS08900 WP_000793792.1 1714152..1714781(+) (sxy/tfoX) [Escherichia coli strain MLI110]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=781976 NL413_RS08900 WP_000793792.1 1714152..1714781(+) (sxy/tfoX) [Escherichia coli strain MLI110]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGCGCCATTATCGGGATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTAGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T8SP29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995