Detailed information
Bioinformatically predicted
Overview
| Name | luxS | Type | Regulator |
| Locus tag | EcoliRb_RS05640 | Genome accession | NZ_AP025682 |
| Coordinates | 1181894..1182409 (+) | Length | 171 a.a. |
| NCBI ID | WP_001130208.1 | Uniprot ID | Q8FEP8 |
| Organism | Escherichia coli strain Rb-50 | ||
| Function | induction of competence (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1176894..1187409
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EcoliRb_RS05595 (TRECRb50_10810) | csrA | 1177884..1178069 (+) | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| EcoliRb_RS05625 (TRECRb50_10820) | yqaB | 1179124..1179690 (+) | 567 | WP_000273309.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| EcoliRb_RS05630 (TRECRb50_10830) | yqaA | 1179687..1180115 (+) | 429 | WP_137501109.1 | YqaA family protein | - |
| EcoliRb_RS05635 (TRECRb50_10840) | gshA | 1180188..1181744 (+) | 1557 | WP_137501108.1 | glutamate--cysteine ligase | - |
| EcoliRb_RS05640 (TRECRb50_10850) | luxS | 1181894..1182409 (+) | 516 | WP_001130208.1 | S-ribosylhomocysteine lyase | Regulator |
| EcoliRb_RS05645 (TRECRb50_10860) | emrB | 1182473..1184011 (-) | 1539 | WP_137501107.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| EcoliRb_RS05650 (TRECRb50_10870) | emrA | 1184028..1185200 (-) | 1173 | WP_001295175.1 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
| EcoliRb_RS05655 (TRECRb50_10880) | emrR | 1185327..1185857 (-) | 531 | WP_000378442.1 | multidrug efflux transporter EmrAB transcriptional repressor EmrR | - |
| EcoliRb_RS05660 (TRECRb50_10890) | ygaH | 1185948..1186283 (-) | 336 | WP_000119749.1 | L-valine transporter subunit YgaH | - |
| EcoliRb_RS05665 (TRECRb50_10900) | ygaZ | 1186273..1187010 (-) | 738 | WP_000445658.1 | L-valine exporter subunit YgaZ | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19443.21 Da Isoelectric Point: 5.0362
>NTDB_id=78197 EcoliRb_RS05640 WP_001130208.1 1181894..1182409(+) (luxS) [Escherichia coli strain Rb-50]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI
Nucleotide
Download Length: 516 bp
>NTDB_id=78197 EcoliRb_RS05640 WP_001130208.1 1181894..1182409(+) (luxS) [Escherichia coli strain Rb-50]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| luxS | Vibrio cholerae strain A1552 |
73.684 |
100 |
0.737 |