Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   Q3O83_RS14035 Genome accession   NZ_CP130445
Coordinates   2883411..2884115 (-) Length   234 a.a.
NCBI ID   WP_014418670.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain C6.7     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2878411..2889115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3O83_RS14015 (Q3O83_14015) cysK 2878421..2879392 (+) 972 WP_014305602.1 cysteine synthase A -
  Q3O83_RS14020 (Q3O83_14020) pepV 2879430..2880821 (-) 1392 WP_044053537.1 dipeptidase PepV -
  Q3O83_RS14025 (Q3O83_14025) - 2880917..2882221 (+) 1305 WP_014305604.1 NCS2 family permease -
  Q3O83_RS14030 (Q3O83_14030) - 2882254..2883414 (-) 1161 WP_069473546.1 ABC transporter permease -
  Q3O83_RS14035 (Q3O83_14035) pptA 2883411..2884115 (-) 705 WP_014418670.1 ABC transporter ATP-binding protein Regulator
  Q3O83_RS14040 (Q3O83_14040) - 2884398..2884619 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  Q3O83_RS14045 (Q3O83_14045) - 2884747..2885466 (-) 720 WP_015387833.1 pseudouridine synthase -
  Q3O83_RS14050 (Q3O83_14050) - 2885523..2887160 (-) 1638 WP_003152313.1 polysaccharide biosynthesis protein -
  Q3O83_RS14055 (Q3O83_14055) - 2887366..2888631 (+) 1266 WP_003152311.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25726.43 Da        Isoelectric Point: 4.4916

>NTDB_id=781958 Q3O83_RS14035 WP_014418670.1 2883411..2884115(-) (pptA) [Bacillus amyloliquefaciens strain C6.7]
MGELLNANIVCAGYADRPKVISDVSLSVNAGEIAGLIGANGAGKSTVIKAVLGLSRDIEGGIEWNDSSYAYIPERPSFYD
ELTLWEHLELTGSLRGIEGEECRERAGRLLEEFSLTSVKHDLPSGFSKGMQQKLMLIQAFLAKPDIYIIDEPFIGLDPIS
TKLFTDMLIAEKERGAGILMCTHVLDTAEKICDRFYLLDQGALLLQGTLEELQEKTGSRSLLDCFYSAVRSSQR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=781958 Q3O83_RS14035 WP_014418670.1 2883411..2884115(-) (pptA) [Bacillus amyloliquefaciens strain C6.7]
TTGGGAGAATTATTGAATGCAAACATTGTCTGCGCCGGTTATGCTGACAGGCCGAAGGTGATTTCCGATGTATCTCTGTC
AGTCAACGCTGGTGAAATTGCCGGTTTAATCGGAGCGAACGGCGCGGGGAAAAGTACAGTGATAAAGGCGGTTCTCGGGC
TGTCCCGGGATATTGAAGGCGGTATTGAGTGGAATGATTCATCTTATGCTTACATACCGGAGCGGCCGAGTTTTTACGAT
GAACTGACGCTTTGGGAGCACCTCGAGCTGACCGGGTCATTGCGGGGTATAGAAGGGGAAGAGTGCCGTGAGCGGGCAGG
GCGGCTGCTTGAAGAGTTTTCGCTGACGTCTGTAAAACATGATTTGCCTTCCGGTTTTTCAAAAGGGATGCAGCAAAAGC
TGATGCTTATACAGGCATTTTTGGCGAAGCCGGATATTTACATCATTGATGAGCCTTTTATCGGACTTGATCCGATCTCA
ACGAAGCTGTTTACCGACATGCTGATTGCTGAGAAAGAAAGGGGCGCGGGAATTTTGATGTGCACGCATGTTCTGGATAC
GGCGGAAAAAATCTGCGACCGGTTTTATTTGCTGGATCAGGGCGCTCTGCTTCTTCAAGGCACGTTAGAGGAGCTTCAGG
AAAAAACGGGGAGCCGTTCACTGCTGGATTGCTTTTATTCAGCGGTTCGGAGCAGTCAGCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

45

100

0.462
  pptA Streptococcus thermophilus LMD-9

44.167

100

0.453