Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   Q3O83_RS05805 Genome accession   NZ_CP130445
Coordinates   1122038..1123198 (+) Length   386 a.a.
NCBI ID   WP_161503321.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain C6.7     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1117038..1128198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3O83_RS05780 (Q3O83_05780) - 1117784..1118971 (+) 1188 WP_003155036.1 putative glycoside hydrolase -
  Q3O83_RS05785 (Q3O83_05785) - 1119089..1119667 (+) 579 WP_003155035.1 GNAT family N-acetyltransferase -
  Q3O83_RS05790 (Q3O83_05790) spx 1119846..1120241 (+) 396 WP_003155034.1 transcriptional regulator Spx -
  Q3O83_RS05795 (Q3O83_05795) - 1120299..1120955 (-) 657 WP_003155033.1 TerC family protein -
  Q3O83_RS05800 (Q3O83_05800) mecA 1121231..1121887 (+) 657 WP_003155032.1 adaptor protein MecA Regulator
  Q3O83_RS05805 (Q3O83_05805) coiA 1122038..1123198 (+) 1161 WP_161503321.1 competence protein CoiA family protein Machinery gene
  Q3O83_RS05810 (Q3O83_05810) pepF 1123426..1125255 (+) 1830 WP_003155028.1 oligoendopeptidase F Regulator
  Q3O83_RS05815 (Q3O83_05815) - 1125293..1125460 (-) 168 WP_003155026.1 hypothetical protein -
  Q3O83_RS05820 (Q3O83_05820) spxH 1125746..1126648 (-) 903 WP_003155024.1 protease adaptor protein SpxH -
  Q3O83_RS05825 (Q3O83_05825) - 1126645..1127043 (-) 399 WP_003155023.1 thiol management oxidoreductase -
  Q3O83_RS05830 (Q3O83_05830) - 1127272..1127958 (-) 687 WP_003155022.1 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 386 a.a.        Molecular weight: 44335.12 Da        Isoelectric Point: 10.0426

>NTDB_id=781891 Q3O83_RS05805 WP_161503321.1 1122038..1123198(+) (coiA) [Bacillus amyloliquefaciens strain C6.7]
MFSAVTADGRLIQLAGSYSKEKAAELRKKRWFCPVCKSELDIKLGREKLPHFAHKKSRLCPGESEPESEYHLEGKRQLFL
WLKTQGCSVSLEPYLTSAGQRPDLTAESGEERLAFEFQCANLSADSLKSRTAGLKSAGYRPVWIIGAKRLKRMAAQFFRL
SAFHWQFFEVNSFSSLMFYCPDVRSFYRLHSITPFYTGYSYAGLTAIPLHKANLKDICHPEGRHSVRLSSWGRAVAGFRS
KSGRFLSEDAGLIRRLFYERHQVAFPFLPSEVFIPVSAGFVFASPVFVWQGHLYLRLAELSKKGAPIRLSGMVHDLRQKI
RHKEIRMRYGSQDSLIGMAVKQYADFLCLQDFLREIENEVYMPSSQQKRPQTAEELRRRDLLFFGE

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=781891 Q3O83_RS05805 WP_161503321.1 1122038..1123198(+) (coiA) [Bacillus amyloliquefaciens strain C6.7]
ATGTTCAGTGCTGTGACTGCCGACGGACGGCTCATTCAGCTGGCCGGAAGCTATTCAAAGGAAAAAGCGGCGGAGCTGAG
AAAGAAACGCTGGTTCTGCCCCGTTTGCAAAAGTGAGCTTGATATCAAACTGGGACGGGAGAAACTGCCGCACTTCGCTC
ATAAAAAAAGCAGGCTGTGTCCCGGGGAATCCGAACCTGAAAGCGAATACCATCTGGAAGGAAAAAGACAGCTTTTTCTC
TGGCTGAAGACACAAGGGTGCAGTGTCAGCCTGGAACCGTATCTGACTTCCGCTGGGCAGCGGCCTGACTTGACGGCAGA
AAGCGGAGAAGAGAGGCTGGCTTTTGAATTTCAATGTGCGAACCTTTCGGCGGACTCTTTAAAGAGCCGGACGGCAGGCC
TGAAAAGTGCCGGGTACCGGCCGGTCTGGATCATCGGGGCAAAACGGTTAAAACGGATGGCTGCGCAATTTTTCCGGCTT
TCTGCTTTTCACTGGCAGTTCTTTGAAGTCAATTCATTTTCCTCCTTAATGTTTTACTGCCCCGACGTCCGCTCCTTTTA
CAGGCTGCATTCCATCACTCCGTTTTACACCGGCTATTCTTATGCCGGCTTAACCGCAATCCCTCTTCACAAAGCAAACC
TGAAAGACATTTGTCATCCGGAAGGGCGGCACAGCGTCAGACTTTCCTCGTGGGGGCGTGCCGTTGCCGGCTTCCGCAGC
AAAAGCGGGCGGTTTTTATCTGAAGATGCCGGTCTTATCCGGCGTCTTTTTTACGAAAGACATCAGGTTGCATTTCCATT
TCTCCCCTCTGAAGTGTTTATTCCCGTTTCAGCAGGCTTTGTGTTTGCAAGTCCCGTTTTTGTGTGGCAGGGCCATTTAT
ACTTGCGGCTTGCGGAACTTTCTAAAAAAGGCGCTCCGATCCGATTATCCGGCATGGTTCATGATTTACGGCAAAAAATC
AGGCATAAGGAGATCCGGATGCGGTATGGTTCACAAGACAGCCTTATCGGAATGGCGGTAAAACAATATGCCGATTTCTT
ATGCTTGCAGGATTTTTTAAGGGAAATTGAGAATGAAGTATATATGCCCTCATCTCAGCAGAAGCGCCCTCAAACGGCAG
AAGAGCTGCGCCGGCGGGACCTGCTCTTTTTTGGGGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

46.277

97.409

0.451