Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   EcoliRb_RS03890 Genome accession   NZ_AP025682
Coordinates   804487..805677 (-) Length   396 a.a.
NCBI ID   WP_115439132.1    Uniprot ID   -
Organism   Escherichia coli strain Rb-50     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 799487..810677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EcoliRb_RS03880 (TRECRb50_07490) - 800037..803390 (+) 3354 WP_244331660.1 hypothetical protein -
  EcoliRb_RS03885 (TRECRb50_07500) - 803442..804056 (+) 615 WP_001352947.1 hypothetical protein -
  EcoliRb_RS03890 (TRECRb50_07510) kpsS 804487..805677 (-) 1191 WP_115439132.1 capsular biosynthesis protein Regulator
  EcoliRb_RS03895 (TRECRb50_07520) - 805712..807739 (-) 2028 WP_115439131.1 capsular polysaccharide biosynthesis protein -
  EcoliRb_RS03900 (TRECRb50_07530) kdsB 807736..808476 (-) 741 WP_001554265.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EcoliRb_RS03905 (TRECRb50_07540) - 808486..810162 (-) 1677 WP_001305965.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 396 a.a.        Molecular weight: 47242.61 Da        Isoelectric Point: 10.1234

>NTDB_id=78189 EcoliRb_RS03890 WP_115439132.1 804487..805677(-) (kpsS) [Escherichia coli strain Rb-50]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKILPRLMNELDQRYYLAVLQVYNDSQI
RNHSSYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTTGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGRTFEIK

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=78189 EcoliRb_RS03890 WP_115439132.1 804487..805677(-) (kpsS) [Escherichia coli strain Rb-50]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGTCGTAACGCTGTGAATGTAGTATTCAACGGCGGGGATCGTTTTTACTGCC
GTCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCATCGTCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGATATTACCGCGGTTAATGAACGAACTGGACCAGCGTTATTATCTTGCTGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAGTTATAACGATGTACGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACAATTAACAGTACGACGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGATTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGAGAACTTTTGAGATTAAGTGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.949

99.242

0.396

Multiple sequence alignment