Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NL409_RS02225 Genome accession   NZ_CP116994
Coordinates   97858..98487 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MLI108K1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 92858..103487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL409_RS02205 (NL409_002190) ycbZ 93259..95019 (-) 1761 WP_000152888.1 Lon protease family protein -
  NL409_RS02210 (NL409_002195) matP 95205..95657 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NL409_RS02215 (NL409_002200) ompA 95733..96773 (-) 1041 WP_001400178.1 porin OmpA -
  NL409_RS02220 (NL409_002205) sulA 97130..97639 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NL409_RS02225 (NL409_002210) sxy/tfoX 97858..98487 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NL409_RS02230 (NL409_002215) yccS 98450..100612 (-) 2163 WP_000875058.1 YccS family putative transporter -
  NL409_RS02235 (NL409_002220) yccF 100622..101068 (-) 447 WP_001261235.1 YccF domain-containing protein -
  NL409_RS02240 (NL409_002225) helD 101191..103245 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=781878 NL409_RS02225 WP_000839153.1 97858..98487(+) (sxy/tfoX) [Escherichia coli strain MLI108K1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=781878 NL409_RS02225 WP_000839153.1 97858..98487(+) (sxy/tfoX) [Escherichia coli strain MLI108K1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1