Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   Q3O83_RS05160 Genome accession   NZ_CP130445
Coordinates   993924..994667 (+) Length   247 a.a.
NCBI ID   WP_003155231.1    Uniprot ID   A7Z316
Organism   Bacillus amyloliquefaciens strain C6.7     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 988924..999667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3O83_RS05125 (Q3O83_05125) - 989289..989630 (+) 342 WP_003155243.1 YhaI family protein -
  Q3O83_RS05130 (Q3O83_05130) - 989627..990238 (-) 612 WP_003155240.1 HTH-type transcriptional regulator Hpr -
  Q3O83_RS05135 (Q3O83_05135) - 990418..990774 (-) 357 WP_007409224.1 YtxH domain-containing protein -
  Q3O83_RS05140 (Q3O83_05140) - 990892..991083 (+) 192 WP_007409223.1 hypothetical protein -
  Q3O83_RS05145 (Q3O83_05145) - 991141..991659 (-) 519 WP_003155234.1 tryptophan transporter -
  Q3O83_RS05150 (Q3O83_05150) serC 991780..992859 (-) 1080 WP_003155233.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  Q3O83_RS05155 (Q3O83_05155) - 992996..993433 (-) 438 WP_032866181.1 HIT family protein -
  Q3O83_RS05160 (Q3O83_05160) pptA 993924..994667 (+) 744 WP_003155231.1 ABC transporter ATP-binding protein EcsA Regulator
  Q3O83_RS05165 (Q3O83_05165) - 994660..995886 (+) 1227 WP_014304729.1 ABC transporter permease -
  Q3O83_RS05170 (Q3O83_05170) - 995929..996633 (+) 705 WP_003155229.1 EcsC family protein -
  Q3O83_RS05175 (Q3O83_05175) - 996657..997844 (-) 1188 WP_014304730.1 M20 family metallopeptidase -
  Q3O83_RS05180 (Q3O83_05180) - 997913..999298 (-) 1386 WP_014304731.1 hypothetical protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27724.14 Da        Isoelectric Point: 5.9140

>NTDB_id=781877 Q3O83_RS05160 WP_003155231.1 993924..994667(+) (pptA) [Bacillus amyloliquefaciens strain C6.7]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFSEDKESYRSQFTY
IPETPVLYEELTLKEHLELTAMAYGLSKETLEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPSLYIIDE
PFLGLDPLAINALLERMDAAKKAGSSVLMSTHILATAERYCDAFIILHNGEVRASGTLEELREQFGMKDAALDDLYIELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=781877 Q3O83_RS05160 WP_003155231.1 993924..994667(+) (pptA) [Bacillus amyloliquefaciens strain C6.7]
ATGTCTCTGCTATCGGTAAAAGACTTAACCGGCGGTTATACGAGAAACCCGGTCTTAAAAAATGTTTCATTCACCCTTGA
GCCGAACCAGATTGTCGGACTCATCGGATTAAACGGCGCGGGCAAAAGCACGACGATCCGGCATATTATCGGATTAATGG
ACCCGCATAAAGGCTCGATCGAGCTGAACGGCAAGACGTTTTCGGAGGATAAGGAAAGCTACCGCTCGCAATTTACGTAC
ATCCCCGAAACGCCGGTGCTGTATGAAGAACTGACGCTCAAAGAGCATCTGGAGCTGACGGCCATGGCGTACGGCCTTTC
CAAAGAAACGCTTGAAAAAAGGCTTCCTCCGCTTTTGAAAGAATTCAGAATGGAAAAAAGGCTGAAATGGTTTCCCGCTC
ACTTTTCCAAGGGGATGAAGCAGAAGGTCATGATCATGTGCGCGTTTCTCGCGGAGCCCTCGCTTTATATCATTGACGAG
CCGTTTCTCGGCCTTGACCCGCTTGCGATCAATGCATTGCTGGAGCGGATGGACGCCGCGAAAAAAGCCGGATCAAGCGT
GCTGATGTCAACACATATCCTGGCTACGGCAGAGCGCTACTGTGACGCTTTCATTATTTTACATAACGGCGAAGTGCGGG
CAAGCGGCACACTGGAAGAACTGAGAGAGCAGTTCGGCATGAAAGACGCAGCTCTAGATGACTTGTATATTGAACTGACG
AAGGAAGACGCCGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z316

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

96.761

0.555
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547