Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JLF39_RS08505 Genome accession   NZ_AP022452
Coordinates   1775170..1775796 (+) Length   208 a.a.
NCBI ID   WP_200925084.1    Uniprot ID   -
Organism   Enterobacter kobei strain STW0522-62     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1770170..1780796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLF39_RS08485 (STW0522ENT62_16610) - 1770568..1772328 (-) 1761 WP_048996937.1 Lon protease family protein -
  JLF39_RS08490 (STW0522ENT62_16620) matP 1772515..1772967 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  JLF39_RS08495 (STW0522ENT62_16630) ompA 1773032..1774087 (-) 1056 WP_200925083.1 porin OmpA -
  JLF39_RS08500 (STW0522ENT62_16640) sulA 1774443..1774952 (-) 510 WP_200925365.1 SOS-induced cell division inhibitor SulA -
  JLF39_RS08505 (STW0522ENT62_16650) sxy/tfoX 1775170..1775796 (+) 627 WP_200925084.1 TfoX/Sxy family DNA transformation protein Regulator
  JLF39_RS08510 (STW0522ENT62_16660) yccS 1775753..1777915 (-) 2163 WP_200925085.1 YccS family putative transporter -
  JLF39_RS08515 (STW0522ENT62_16670) - 1777935..1778381 (-) 447 WP_014883256.1 YccF domain-containing protein -
  JLF39_RS08520 (STW0522ENT62_16680) helD 1778505..1780559 (+) 2055 WP_096218153.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23844.44 Da        Isoelectric Point: 9.3304

>NTDB_id=78187 JLF39_RS08505 WP_200925084.1 1775170..1775796(+) (sxy/tfoX) [Enterobacter kobei strain STW0522-62]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERCQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARECWLKMRAKN
RALGIKVLFALEGAIEGLHEAALPAGTRRELTEWFNALPGPQKNHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=78187 JLF39_RS08505 WP_200925084.1 1775170..1775796(+) (sxy/tfoX) [Enterobacter kobei strain STW0522-62]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCCCAGGAATACCTCTCACCGCTAGGAGAAATTCATCATCGCGCCCT
GTTCGGTGGCTATACCCTGGCGGTAGATGACGCGGTTTTTGCCATGGTGTCAGATGGCGAGCTGTACCTTCGCGCGTGTG
AAGAAAGCGCAAAATACTGTGTAAAAAATGCCGCCTCTTTTTTGACGTTGATGAAACGAGGCCGCCCGGTACTTCTCAAC
TATTACCGTGTCGATGATGGACTGTGGCAAGACAGGGAACGGCTGCTTCAGCTCTCCTCTTTCGCGCTCAATGCGGCGAG
GAAAGAGCGCTGTCAGCGCCATCAACGAAACCGGCTTAAAGATCTGCCAAACCTGACCTTTCAGCTTGAGGTATTACTTT
TTGAAGCTGGCATTACTAACGAAGAGACGCTGCGGGCACTGGGTGCCAGGGAGTGCTGGTTAAAGATGCGGGCTAAAAAT
AGGGCACTCGGTATTAAAGTGCTCTTCGCCCTTGAGGGGGCTATTGAGGGTTTGCATGAGGCGGCACTCCCGGCAGGCAC
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGGGCCACAGAAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.635

97.596

0.562

Multiple sequence alignment