Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NL408_RS14560 Genome accession   NZ_CP116987
Coordinates   2946550..2947179 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MLI107     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2941550..2952179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL408_RS14545 (NL408_014545) helD 2941792..2943846 (-) 2055 WP_000420533.1 DNA helicase IV -
  NL408_RS14550 (NL408_014550) yccF 2943969..2944415 (+) 447 WP_001261231.1 YccF domain-containing protein -
  NL408_RS14555 (NL408_014555) yccS 2944425..2946587 (+) 2163 WP_000875023.1 YccS family putative transporter -
  NL408_RS14560 (NL408_014560) sxy/tfoX 2946550..2947179 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NL408_RS14565 (NL408_014565) sulA 2947398..2947907 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NL408_RS14570 (NL408_014570) ompA 2948264..2949316 (+) 1053 WP_000750419.1 porin OmpA -
  NL408_RS14575 (NL408_014575) matP 2949391..2949843 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  NL408_RS14580 (NL408_014580) ycbZ 2950029..2951789 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=781869 NL408_RS14560 WP_000839153.1 2946550..2947179(-) (sxy/tfoX) [Escherichia coli strain MLI107]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=781869 NL408_RS14560 WP_000839153.1 2946550..2947179(-) (sxy/tfoX) [Escherichia coli strain MLI107]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1