Detailed information NTG0781852

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: Q3O83_RS01495
• Genome accession: NZ_CP130445
• Coordinates: 268605..269726 (+)
• Length: 373 a.a.
• NCBI ID: WP_003156660.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain C6.7
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 263605..274726

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q3O83_RS01475 (Q3O83_01475)	-	263912..264907 (-)	996	WP_014304282.1	DUF5105 domain-containing protein	-
Q3O83_RS01480 (Q3O83_01480)	-	265036..266436 (+)	1401	WP_069473135.1	YcdB/YcdC domain-containing protein	-
Q3O83_RS01485 (Q3O83_01485)	-	266637..267995 (+)	1359	WP_003156662.1	YcdB/YcdC domain-containing protein	-
Q3O83_RS01490 (Q3O83_01490)	-	267992..268495 (-)	504	WP_003156661.1	M15 family metallopeptidase	-
Q3O83_RS01495 (Q3O83_01495)	rapF	268605..269726 (+)	1122	WP_003156660.1	tetratricopeptide repeat protein	Regulator
Q3O83_RS01500 (Q3O83_01500)	-	269842..270621 (+)	780	WP_014304287.1	glucose 1-dehydrogenase	-
Q3O83_RS01505 (Q3O83_01505)	-	270704..272383 (+)	1680	WP_069448528.1	alpha-glucosidase	-
Q3O83_RS01510 (Q3O83_01510)	-	272574..273533 (+)	960	WP_024084862.1	metal ABC transporter substrate-binding protein	-
Q3O83_RS01515 (Q3O83_01515)	-	273588..274283 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.58 Da
• Isoelectric Point: 5.1691

>NTDB_id=781852 Q3O83_RS01495 WP_003156660.1 268605..269726(+) (rapF) [Bacillus amyloliquefaciens strain C6.7]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=781852 Q3O83_RS01495 WP_003156660.1 268605..269726(+) (rapF) [Bacillus amyloliquefaciens strain C6.7]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTAGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGAGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATCCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402