Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   Q2B68_RS20160 Genome accession   NZ_CP130280
Coordinates   4023910..4024599 (-) Length   229 a.a.
NCBI ID   WP_004393241.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PM415     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4018910..4029599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS20140 (Q2B68_20140) - 4019814..4020161 (-) 348 WP_004393256.1 YxeA family protein -
  Q2B68_RS20145 (Q2B68_20145) yxdM 4020175..4022043 (-) 1869 WP_302565038.1 ABC transporter permease YxdM -
  Q2B68_RS20150 (Q2B68_20150) yxdL 4022018..4022791 (-) 774 WP_004393250.1 ABC transporter ATP-binding protein YxdL -
  Q2B68_RS20155 (Q2B68_20155) yxdK 4022936..4023913 (-) 978 WP_004393249.1 two-component system sensor histidine kinase YxdK -
  Q2B68_RS20160 (Q2B68_20160) braR 4023910..4024599 (-) 690 WP_004393241.1 two-component system response regulator YxdJ Regulator
  Q2B68_RS20165 (Q2B68_20165) fba 4024707..4025579 (-) 873 WP_024085999.1 class II fructose-1,6-bisphosphate aldolase -
  Q2B68_RS20170 (Q2B68_20170) iolI 4025582..4026424 (-) 843 WP_015387483.1 2-keto-myo-inositol isomerase -
  Q2B68_RS20175 (Q2B68_20175) - 4026512..4027381 (-) 870 WP_015387482.1 sugar phosphate isomerase/epimerase family protein -
  Q2B68_RS20180 (Q2B68_20180) - 4027400..4028434 (-) 1035 WP_004393236.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26545.26 Da        Isoelectric Point: 4.8564

>NTDB_id=781835 Q2B68_RS20160 WP_004393241.1 4023910..4024599(-) (braR) [Bacillus amyloliquefaciens strain PM415]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=781835 Q2B68_RS20160 WP_004393241.1 4023910..4024599(-) (braR) [Bacillus amyloliquefaciens strain PM415]
TTGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ACCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
CATTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAACGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393