Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   Q2B68_RS15400 Genome accession   NZ_CP130280
Coordinates   3111148..3111852 (-) Length   234 a.a.
NCBI ID   WP_015387834.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PM415     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3106148..3116852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS15380 (Q2B68_15380) cysK 3106158..3107129 (+) 972 WP_014305602.1 cysteine synthase A -
  Q2B68_RS15385 (Q2B68_15385) pepV 3107167..3108558 (-) 1392 WP_302564981.1 dipeptidase PepV -
  Q2B68_RS15390 (Q2B68_15390) - 3108654..3109958 (+) 1305 WP_014305604.1 NCS2 family permease -
  Q2B68_RS15395 (Q2B68_15395) - 3109991..3111151 (-) 1161 WP_015387835.1 ABC transporter permease -
  Q2B68_RS15400 (Q2B68_15400) pptA 3111148..3111852 (-) 705 WP_015387834.1 ABC transporter ATP-binding protein Regulator
  Q2B68_RS15405 (Q2B68_15405) - 3112135..3112356 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  Q2B68_RS15410 (Q2B68_15410) - 3112484..3113203 (-) 720 WP_069013296.1 pseudouridine synthase -
  Q2B68_RS15415 (Q2B68_15415) - 3113260..3114897 (-) 1638 WP_003152313.1 polysaccharide biosynthesis protein -
  Q2B68_RS15420 (Q2B68_15420) - 3115103..3116368 (+) 1266 WP_088037455.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25744.46 Da        Isoelectric Point: 4.4916

>NTDB_id=781809 Q2B68_RS15400 WP_015387834.1 3111148..3111852(-) (pptA) [Bacillus amyloliquefaciens strain PM415]
MGELLNANIVCAGYADRPKVISDVSLSVNAGEIAGLIGANGAGKSTVIKAVLGLSRDIEGGIEWNDSSYAYIPERPSFYD
ELTLWEHLELTGSLRGIEGEECRERAGRLLEEFSLTSVKHDLPSGFSKGMQQKMMLIQAFLAKPDIYIIDEPFIGLDPIS
TKLFTDMLIAEKERGAGILMCTHVLDTAEKICDRFYLLDQGALLLQGTLEELQEKTGSRSLLDCFYSAVRSSQR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=781809 Q2B68_RS15400 WP_015387834.1 3111148..3111852(-) (pptA) [Bacillus amyloliquefaciens strain PM415]
TTGGGAGAATTATTGAATGCAAACATTGTCTGCGCCGGTTATGCTGACAGGCCGAAGGTGATTTCCGATGTATCTCTGTC
AGTCAACGCTGGTGAAATTGCCGGTTTAATCGGAGCGAACGGCGCGGGGAAAAGTACAGTGATAAAGGCGGTTCTCGGGC
TGTCCCGGGATATTGAAGGCGGTATTGAGTGGAATGATTCATCTTATGCTTACATACCGGAGCGGCCGAGTTTTTACGAT
GAACTGACGCTTTGGGAGCACCTCGAGCTGACCGGGTCATTGCGGGGTATAGAAGGGGAAGAGTGCCGTGAGCGGGCAGG
GCGGCTGCTTGAAGAGTTTTCGCTGACGTCTGTAAAACATGATTTGCCTTCCGGTTTTTCAAAAGGGATGCAGCAAAAGA
TGATGCTTATACAGGCATTTTTGGCGAAGCCGGATATTTACATCATTGATGAGCCTTTTATCGGACTTGATCCGATCTCA
ACGAAGCTGTTTACCGACATGCTGATTGCTGAGAAAGAAAGGGGCGCGGGAATTTTGATGTGCACGCATGTTCTGGATAC
GGCGGAAAAAATCTGCGACCGGTTTTATTTGCTGGATCAGGGCGCTCTGCTTCTTCAAGGCACGTTAGAGGAGCTTCAGG
AAAAAACGGGGAGCCGTTCACTGCTGGATTGCTTTTATTCAGCGGTTCGGAGCAGTCAGCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

45

100

0.462
  pptA Streptococcus thermophilus LMD-9

44.167

100

0.453