Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   Q2B68_RS10660 Genome accession   NZ_CP130280
Coordinates   2210628..2212406 (-) Length   592 a.a.
NCBI ID   WP_024085469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PM415     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2205628..2217406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS10630 (Q2B68_10630) - 2205741..2206277 (-) 537 WP_003153801.1 DUF420 domain-containing protein -
  Q2B68_RS10635 (Q2B68_10635) - 2206422..2207204 (-) 783 WP_003153800.1 VLRF1 family aeRF1-type release factor -
  Q2B68_RS10640 (Q2B68_10640) - 2207399..2207896 (+) 498 WP_003153799.1 N-acetyltransferase -
  Q2B68_RS10645 (Q2B68_10645) - 2207961..2208938 (+) 978 WP_302564937.1 S66 peptidase family protein -
  Q2B68_RS10650 (Q2B68_10650) - 2208970..2209362 (-) 393 WP_024085467.1 hypothetical protein -
  Q2B68_RS10655 (Q2B68_10655) - 2209520..2210392 (-) 873 WP_003153795.1 3D domain-containing protein -
  Q2B68_RS10660 (Q2B68_10660) recQ 2210628..2212406 (-) 1779 WP_024085469.1 DNA helicase RecQ Machinery gene
  Q2B68_RS10670 (Q2B68_10670) - 2212914..2213540 (-) 627 WP_003153791.1 FMN-dependent NADH-azoreductase -
  Q2B68_RS10675 (Q2B68_10675) - 2213685..2214176 (-) 492 WP_015388121.1 TraR/DksA C4-type zinc finger protein -
  Q2B68_RS10680 (Q2B68_10680) gerPC 2214260..2214640 (-) 381 WP_014305193.1 spore germination protein GerPC -
  Q2B68_RS10685 (Q2B68_10685) - 2214733..2214966 (+) 234 WP_014305194.1 hypothetical protein -
  Q2B68_RS10690 (Q2B68_10690) - 2214953..2215435 (-) 483 WP_003153787.1 Hsp20/alpha crystallin family protein -
  Q2B68_RS10695 (Q2B68_10695) - 2215506..2215778 (+) 273 WP_003153786.1 hypothetical protein -
  Q2B68_RS10700 (Q2B68_10700) - 2215775..2216008 (+) 234 WP_003153785.1 hypothetical protein -
  Q2B68_RS10705 (Q2B68_10705) - 2216053..2216397 (-) 345 WP_003153783.1 PH domain-containing protein -
  Q2B68_RS10710 (Q2B68_10710) - 2216690..2216830 (-) 141 WP_003153781.1 DUF4025 domain-containing protein -
  Q2B68_RS10715 (Q2B68_10715) - 2216896..2217099 (-) 204 WP_025852320.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 67042.62 Da        Isoelectric Point: 6.5674

>NTDB_id=781773 Q2B68_RS10660 WP_024085469.1 2210628..2212406(-) (recQ) [Bacillus amyloliquefaciens strain PM415]
MLDKAQSLLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGTTIVISPLISLMKDQVDALEE
AGIAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLTSSEFIHILQNITVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFNELKEPPVIIALTATATPEVHDDICKQLHIKKEQTVYTGFARENLTFKVVKGENKDRFIERYLEKNKHEAGIIYTATR
KETDRLYEKLKRSGINAGRYHGRLADDDRKDQQERFLNDQIQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLNSECVLLFSPQDIMVQRFLIDQSAAGEEKQKQDLKKLRQMVDYCHTEDCLQRFILKYFGENEAEACEACGNCTD
TRTAHDVTKEAQMVLSCIIRMNERFGKTMVAQVLSGSKNKKVLENGFSSLSTYGIMKHQSAAEISDFIEFLISDEYIRMA
DGTFPTLMVTQKGRDVLLGKSAVARKEALQAAAVTENDELFELLRRLRKEIAAEQGVPPFVVFSDQTLKEMSAKLPKTDQ
DLLSVKGVGEQKRLKYGAVFLEEIRNYVRETE

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=781773 Q2B68_RS10660 WP_024085469.1 2210628..2212406(-) (recQ) [Bacillus amyloliquefaciens strain PM415]
ATGCTGGATAAAGCCCAATCCCTTCTGGCGCATTATTTTGGCTACGACAGTCTTCGCGCGGGCCAAAAGCAGGCGATACA
ATCAGTTGCAGAGGAGAGAAAAAACACGGTCTGCATTATGCCGACGGGGGGCGGAAAATCAATCTGCTATCAGATTCCCG
CACTGCTGTTTGAAGGAACCACAATCGTTATTTCCCCTCTTATTTCCTTAATGAAAGATCAAGTCGACGCGCTTGAAGAA
GCGGGTATCGCGGCAGCTTATATTAACAGCACCCAGACAAGCCGTGACATTCATGAGCGCCTGACCGGTTTGAAACAAGG
GGCTTACCGGCTCTTTTACATCACACCGGAGCGTTTGACTTCTTCAGAATTCATTCATATCCTGCAGAATATTACGGTTC
CTCTTGTCGCCATTGACGAAGCTCACTGTATATCGCAATGGGGACATGATTTCAGGCCGAGTTACCGGAATATCGAAATC
CTTTTTAATGAATTAAAAGAACCGCCCGTCATCATCGCATTAACGGCGACGGCTACGCCTGAGGTTCATGATGACATCTG
CAAGCAGCTTCATATTAAGAAAGAACAAACTGTATATACCGGTTTTGCCAGAGAGAATTTAACGTTTAAAGTAGTAAAGG
GCGAAAACAAAGACCGGTTTATCGAGCGGTACCTCGAAAAAAATAAACACGAAGCCGGCATTATATATACAGCGACAAGA
AAAGAAACCGACCGTTTATATGAGAAATTAAAACGCAGCGGCATCAATGCCGGCCGTTATCACGGCAGATTGGCGGATGA
CGACAGAAAAGACCAGCAGGAGCGGTTTCTTAATGATCAGATACAAGTGATGGTAGCTACGTCCGCTTTCGGAATGGGAA
TCGATAAGAGCAACATCAGGTTTGTTTTACACGCGCAGATTCCGAAAGATATGGAGAGCTATTACCAAGAAGCCGGACGG
GCCGGGCGCGATGGTCTTAACAGCGAGTGTGTGCTCTTATTTTCGCCGCAGGATATTATGGTGCAGCGTTTTTTAATAGA
CCAATCGGCCGCCGGAGAAGAAAAACAAAAGCAGGATCTCAAAAAGCTGAGACAGATGGTGGATTACTGTCATACGGAAG
ATTGCCTGCAGCGGTTTATTCTGAAGTATTTCGGCGAGAATGAGGCGGAAGCTTGCGAAGCGTGCGGCAATTGCACTGAT
ACAAGGACCGCCCATGACGTCACAAAAGAAGCGCAGATGGTATTGTCTTGCATCATCAGAATGAATGAGCGCTTCGGAAA
AACGATGGTGGCGCAGGTGCTTAGCGGGTCAAAAAATAAAAAAGTGCTGGAAAACGGCTTCAGCAGCCTGTCCACTTACG
GCATTATGAAGCATCAATCCGCAGCGGAAATCAGTGATTTTATCGAATTTCTTATTTCAGATGAATATATCAGAATGGCG
GACGGCACATTTCCCACGCTTATGGTCACCCAAAAAGGCAGGGACGTTCTGCTTGGAAAAAGCGCAGTCGCGAGAAAAGA
AGCCTTACAGGCCGCCGCCGTTACCGAAAATGATGAATTATTTGAGCTTCTCCGGCGTCTCCGCAAAGAGATTGCAGCTG
AACAGGGTGTGCCTCCATTTGTCGTGTTCTCAGACCAGACGTTAAAAGAAATGTCGGCGAAACTTCCGAAAACAGATCAG
GATCTTCTTTCCGTAAAAGGGGTCGGGGAACAAAAAAGATTGAAATACGGAGCGGTTTTTTTAGAAGAAATCCGAAATTA
TGTAAGAGAAACAGAGTGA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(519-584)

RQC domain (RQC)

(404-508)

Helicase conserved C-terminal domain (Helicase_C)

(217-324)

RecQ zinc-binding (RecQ_Zn_bind)

(336-399)

DEAD/DEAH box helicase (DEAD)

(21-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

82.095

100

0.821