Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   Q2B68_RS09675 Genome accession   NZ_CP130280
Coordinates   1895306..1895737 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain PM415     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1890306..1900737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS09655 (Q2B68_09655) spoVS 1890875..1891135 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  Q2B68_RS09660 (Q2B68_09660) tdh 1891394..1892440 (+) 1047 WP_024085310.1 L-threonine 3-dehydrogenase -
  Q2B68_RS09665 (Q2B68_09665) - 1892453..1893631 (+) 1179 WP_088037143.1 glycine C-acetyltransferase -
  Q2B68_RS09670 (Q2B68_09670) miaB 1893774..1895303 (+) 1530 WP_003154116.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  Q2B68_RS09675 (Q2B68_09675) ymcA 1895306..1895737 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  Q2B68_RS09680 (Q2B68_09680) cotE 1895991..1896536 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  Q2B68_RS09685 (Q2B68_09685) hexA 1896655..1899240 (+) 2586 WP_003154108.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=781766 Q2B68_RS09675 WP_003154113.1 1895306..1895737(+) (ymcA) [Bacillus amyloliquefaciens strain PM415]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=781766 Q2B68_RS09675 WP_003154113.1 1895306..1895737(+) (ymcA) [Bacillus amyloliquefaciens strain PM415]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATTATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916