Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   Q2B68_RS05330 Genome accession   NZ_CP130280
Coordinates   1068055..1071447 (+) Length   1130 a.a.
NCBI ID   WP_265422978.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PM415     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1063055..1076447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS05320 (Q2B68_05320) addA 1063117..1066821 (+) 3705 WP_302565235.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  Q2B68_RS05325 (Q2B68_05325) sbcD 1066886..1068058 (+) 1173 WP_003155146.1 exonuclease subunit SbcD -
  Q2B68_RS05330 (Q2B68_05330) sbcC 1068055..1071447 (+) 3393 WP_265422978.1 exonuclease subunit SbcC Machinery gene
  Q2B68_RS05335 (Q2B68_05335) - 1071463..1071756 (+) 294 WP_003155144.1 hypothetical protein -
  Q2B68_RS05340 (Q2B68_05340) - 1071800..1072018 (-) 219 WP_003155143.1 spore germination protein -
  Q2B68_RS05345 (Q2B68_05345) - 1072058..1072453 (-) 396 WP_003155142.1 spore germination protein GerPE -
  Q2B68_RS05350 (Q2B68_05350) - 1072453..1072629 (-) 177 WP_003155141.1 hypothetical protein -
  Q2B68_RS05355 (Q2B68_05355) - 1072626..1073243 (-) 618 WP_003155139.1 spore germination protein GerPC -
  Q2B68_RS05360 (Q2B68_05360) - 1073279..1073515 (-) 237 WP_003155138.1 spore germination protein GerPB -
  Q2B68_RS05365 (Q2B68_05365) - 1073528..1073749 (-) 222 WP_003155135.1 spore germination protein -
  Q2B68_RS05370 (Q2B68_05370) - 1073940..1074149 (-) 210 WP_003155132.1 aspartyl-phosphate phosphatase Spo0E family protein -
  Q2B68_RS05375 (Q2B68_05375) - 1074365..1075270 (+) 906 WP_003155130.1 fumarylacetoacetate hydrolase family protein -
  Q2B68_RS05380 (Q2B68_05380) - 1075364..1075720 (+) 357 WP_003155128.1 YisL family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128115.16 Da        Isoelectric Point: 5.5557

>NTDB_id=781733 Q2B68_RS05330 WP_265422978.1 1068055..1071447(+) (sbcC) [Bacillus amyloliquefaciens strain PM415]
MKPILLTIKGLHSFREEQTIDFAGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDQLAVSFTF
ALQSGHRVSYKVERVFKRTDETKVKTALCRLIEIKDEQTVLADKANEVNKKVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRRAQEAAAKKNEMLAEQSGLGDAGEDALKLAEQQFHEANERLEAAEKKRVRAK
ERFENHQEIWNLQTERDEYERREKKLEERRPYITDLTERLKEAETALALEPYADRCTEAVRRKQRAEQEHELAKRKSEAE
TVSFTRQNEAYEAWRAHKAEQEPKLVKEEELYQRLSAIEQKLLEAKKEAEKTNAEHSKKEEEYEAASKQLAAVKDRLTRG
QNRQNELKEELKAVQVTADERKKCQTAAQLAAGFQQTQEQITKERANLTTQLKNVEKLNGESESLTAKAKTEEEDITRAY
QTLQTVYHMVCETERSLKAAAERAEKTQADLRRRSEEARTAALTKELSEKLIEGKPCPVCGSTQHDRPRSAHETFSPDTA
VQEHLQQVEALLSEAAALSQEVLTAKVALEEQSGRFTEECPFLQSARVPELEAASSISGRPLDEAFSAVRLEWKQMKQDM
LSVKEKVARLISAHQQTVKQAEQLAERIRYEEKEADRLRHSLEELESLSESRLNQYNEVCGDIPPNRIDAWQASIDEKDR
QAEECEKRIETSIAFLKEHEEEKERLQEMKHRLERERLELHYASERLQQVIDGYEQELGTAAEETSVSAKLEAVRQELQL
LKSKEQSLFDALKQAQQSLNDAKGRESGSLMSLRDAEASLEKAQNDWRVRSQDTGFTEPDQVKKSLLPQGRAEEMKKEID
EFLDTSKQLSANISRVTDKLAERRISEEEWTASVSLLKQAEAESGAAMEEKGAQAKAFAVMQKQHKRFKEIEAELKSWQT
QIDRLDKLQSVCKGNTFVEFLAEEQLESVARDASARLGALTRQRYAILVDSEGGFVMRDDANGGVKRPVSSLSGGETFLT
SLSLALALSAQIQLRGQYPLQFFFLDEGFGTLDQGLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPSEPGG
KGTRVTLEIM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=781733 Q2B68_RS05330 WP_265422978.1 1068055..1071447(+) (sbcC) [Bacillus amyloliquefaciens strain PM415]
ATGAAGCCGATTCTGTTAACGATAAAAGGGCTCCACAGCTTCAGGGAGGAACAGACCATTGATTTTGCCGGACTGTCAGG
AGCCGGGGTGTTCGGGATTTTCGGGCCGACCGGAAGCGGAAAATCGTCGATCCTTGATGCCATGACACTCGCTTTATACG
GAAAAGTGGAGCGCGCCGCAAATAATACGCACGGCATTCTGAATCATGCCGAAGATCAGCTTGCCGTCTCATTTACATTC
GCGCTTCAATCCGGCCACCGGGTTTCCTACAAGGTCGAGCGCGTTTTTAAGAGAACGGATGAAACGAAAGTAAAAACCGC
CCTCTGCCGGCTGATTGAAATCAAAGACGAACAAACGGTGCTGGCCGATAAAGCGAATGAAGTGAACAAAAAGGTAGAGG
AGCTTCTTGGCCTGACCATTGACGACTTTACAAGAGCCGTCGTTCTGCCGCAAGGAAAGTTTGCCGAGTTTCTGTCGCTT
AAAGGCGCGGAAAGAAGACATATGCTCCAGCGCCTGTTTAATCTGGAACAGTACGGGGACAGGCTTGTCAAAAAATTGCG
GCGGCGGGCGCAGGAAGCGGCAGCGAAAAAAAATGAAATGCTGGCCGAACAATCCGGCCTCGGAGACGCAGGAGAAGATG
CGCTGAAGCTGGCTGAACAGCAGTTTCACGAAGCGAACGAACGGCTTGAAGCAGCTGAGAAGAAACGGGTCCGGGCAAAA
GAGCGTTTTGAAAATCACCAGGAAATTTGGAACTTGCAGACAGAAAGAGATGAATATGAGCGCCGGGAGAAAAAGCTTGA
GGAAAGACGCCCGTACATCACGGATTTGACTGAGCGTCTTAAAGAGGCGGAAACAGCTCTCGCCCTTGAGCCGTACGCAG
ACCGCTGCACCGAAGCCGTCCGCCGGAAGCAGCGAGCCGAACAGGAACACGAACTGGCCAAACGGAAATCAGAGGCGGAA
ACCGTTTCATTTACCCGGCAAAATGAAGCCTATGAAGCATGGCGCGCCCATAAGGCCGAACAGGAGCCGAAACTTGTCAA
GGAAGAAGAGCTGTATCAAAGACTTTCAGCCATTGAACAAAAACTGCTTGAAGCGAAAAAAGAAGCGGAAAAAACAAATG
CGGAGCACAGCAAAAAAGAGGAAGAATACGAAGCCGCCTCGAAACAGCTGGCCGCAGTGAAAGACCGCCTGACCCGCGGC
CAAAACAGGCAGAATGAGCTGAAAGAAGAGCTGAAAGCAGTTCAAGTGACCGCAGATGAACGGAAAAAATGCCAGACCGC
AGCACAGCTGGCGGCAGGCTTTCAGCAGACACAGGAACAAATCACGAAAGAGCGGGCCAATCTGACAACGCAGCTGAAAA
ACGTGGAGAAGCTCAACGGAGAAAGCGAGTCGCTCACAGCGAAAGCGAAAACGGAAGAGGAAGACATTACGCGCGCTTAT
CAAACGCTGCAAACCGTTTACCATATGGTCTGTGAAACGGAACGTTCACTGAAAGCCGCAGCCGAACGGGCTGAAAAAAC
GCAAGCCGATCTCCGCAGGCGCTCAGAGGAAGCGAGAACGGCTGCATTAACAAAAGAATTATCGGAAAAACTGATCGAAG
GAAAGCCTTGTCCTGTATGCGGCTCGACGCAGCATGACCGCCCGCGTTCCGCTCATGAAACATTCTCGCCTGATACCGCT
GTGCAGGAACATTTGCAGCAGGTGGAAGCACTGCTTTCTGAGGCGGCGGCTCTTTCTCAGGAAGTGCTGACAGCCAAGGT
TGCATTAGAAGAACAGTCGGGGCGTTTTACCGAAGAATGTCCGTTTCTGCAAAGCGCCCGGGTTCCGGAGCTGGAAGCCG
CTTCTTCCATCAGCGGACGCCCGCTTGATGAAGCGTTCAGCGCCGTCCGCTTGGAATGGAAACAAATGAAACAGGATATG
CTGTCGGTAAAAGAGAAGGTCGCAAGACTGATCAGCGCGCATCAGCAGACGGTAAAACAAGCTGAGCAGCTTGCCGAACG
AATCCGCTACGAGGAAAAAGAAGCCGACCGTCTCAGACATTCATTAGAAGAGCTTGAATCGCTGTCAGAAAGCCGATTGA
ATCAGTACAACGAAGTCTGCGGTGATATTCCGCCAAACCGGATTGACGCCTGGCAGGCTTCGATAGATGAGAAGGACAGG
CAGGCAGAAGAATGTGAGAAGCGCATTGAAACAAGCATCGCATTCCTCAAGGAACATGAAGAGGAGAAAGAACGCCTGCA
GGAGATGAAGCATCGGCTTGAACGGGAACGGCTCGAGCTTCACTATGCGTCTGAGCGCCTGCAGCAGGTGATTGACGGAT
ATGAACAAGAGCTCGGAACAGCAGCTGAAGAAACATCAGTTTCCGCAAAGCTTGAAGCGGTGCGGCAGGAATTACAGCTG
TTAAAATCAAAAGAACAGTCCCTATTCGATGCGCTGAAGCAGGCGCAGCAATCACTGAATGATGCAAAAGGCCGGGAATC
AGGGAGTCTCATGTCACTCAGGGATGCTGAGGCCTCTCTTGAGAAAGCGCAAAACGACTGGCGCGTGAGGTCACAAGACA
CCGGGTTTACCGAACCGGACCAAGTTAAAAAAAGTCTGCTTCCGCAAGGGCGTGCAGAGGAAATGAAAAAAGAAATTGAT
GAGTTTCTGGACACCTCAAAACAGCTATCGGCAAATATCAGCCGTGTTACTGATAAATTAGCCGAGCGCCGGATATCGGA
GGAAGAATGGACAGCATCCGTTTCTCTGCTGAAGCAGGCAGAGGCTGAGTCAGGCGCCGCCATGGAGGAAAAAGGAGCAC
AGGCAAAAGCCTTCGCGGTTATGCAAAAACAGCATAAGCGCTTTAAAGAGATTGAAGCCGAACTGAAAAGCTGGCAGACA
CAGATTGACAGGCTTGATAAGCTCCAGTCTGTATGTAAAGGCAATACATTCGTCGAATTTTTAGCGGAAGAACAGCTGGA
AAGCGTGGCTCGGGACGCCTCTGCCCGTCTCGGAGCGCTGACAAGGCAGCGGTATGCCATATTAGTCGATTCAGAAGGCG
GTTTCGTCATGCGTGATGACGCGAACGGAGGCGTCAAACGGCCCGTATCAAGCCTTTCCGGCGGGGAGACGTTTCTGACA
TCGCTGTCGCTTGCGCTTGCCTTGTCCGCCCAGATTCAGCTGCGGGGGCAATACCCGCTGCAATTCTTTTTCTTAGATGA
AGGATTCGGGACTCTTGACCAAGGGCTCTTAGACACCGTTGTCACAGCGCTCGAAAAGCTGCAATCGGACAACTTATCCG
TCGGAGTGATCAGCCATGTGCAGGAGCTGAGAGCGCGTCTGCCGAAAAAATTAATCGTTCATCCGTCCGAACCGGGCGGG
AAAGGCACCCGGGTCACATTGGAGATCATGTAG

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1017-1085)

AAA domain (AAA_23)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

64.317

100

0.646