Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   MWM20_RS22980 Genome accession   NZ_AP025677
Coordinates   4754255..4755247 (-) Length   330 a.a.
NCBI ID   WP_000224477.1    Uniprot ID   -
Organism   Escherichia coli strain Rb-23     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4749255..4760247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM20_RS22970 (TRECRb23_43550) yieP 4752147..4752839 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  MWM20_RS22975 (TRECRb23_43560) mdtD 4752862..4754289 (+) 1428 WP_001280830.1 multidrug transporter subunit MdtD -
  MWM20_RS22980 (TRECRb23_43570) cytR 4754255..4755247 (-) 993 WP_000224477.1 ribose operon transcriptional repressor RbsR Regulator
  MWM20_RS22985 (TRECRb23_43580) rbsK 4755251..4756180 (-) 930 WP_021536639.1 ribokinase -
  MWM20_RS22990 (TRECRb23_43590) rbsB 4756306..4757196 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  MWM20_RS22995 (TRECRb23_43600) rbsC 4757221..4758186 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  MWM20_RS23000 (TRECRb23_43610) rbsA 4758191..4759696 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  MWM20_RS23005 (TRECRb23_43620) rbsD 4759704..4760123 (-) 420 WP_001296586.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36641.93 Da        Isoelectric Point: 5.2141

>NTDB_id=78169 MWM20_RS22980 WP_000224477.1 4754255..4755247(-) (cytR) [Escherichia coli strain Rb-23]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRTAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=78169 MWM20_RS22980 WP_000224477.1 4754255..4755247(-) (cytR) [Escherichia coli strain Rb-23]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACAGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATTGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGACGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTACGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATACACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTACAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment