Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   Q0Y58_RS25520 Genome accession   NZ_CP129997
Coordinates   4858628..4859224 (-) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain PA1045     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4853628..4864224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0Y58_RS25495 - 4854022..4854171 (-) 150 Protein_4480 hypothetical protein -
  Q0Y58_RS25500 - 4854264..4855847 (+) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -
  Q0Y58_RS25505 - 4855844..4856731 (+) 888 WP_031685965.1 SDR family oxidoreductase -
  Q0Y58_RS25510 - 4856805..4857344 (+) 540 WP_302118168.1 CbrC family protein -
  Q0Y58_RS25515 - 4857357..4858505 (-) 1149 WP_003111078.1 acyl-CoA dehydrogenase family protein -
  Q0Y58_RS25520 recR 4858628..4859224 (-) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  Q0Y58_RS25525 - 4859303..4859629 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  Q0Y58_RS25530 dnaX 4859675..4861756 (-) 2082 WP_302118172.1 DNA polymerase III subunit gamma/tau -
  Q0Y58_RS25535 - 4861793..4862659 (+) 867 WP_003120462.1 ABC transporter substrate-binding protein -
  Q0Y58_RS25545 - 4862913..4863290 (-) 378 WP_023099754.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=781665 Q0Y58_RS25520 WP_003087237.1 4858628..4859224(-) (recR) [Pseudomonas aeruginosa strain PA1045]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=781665 Q0Y58_RS25520 WP_003087237.1 4858628..4859224(-) (recR) [Pseudomonas aeruginosa strain PA1045]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCTCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTGGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48