Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JLF31_RS08450 Genome accession   NZ_AP022446
Coordinates   1742985..1743611 (+) Length   208 a.a.
NCBI ID   WP_058690680.1    Uniprot ID   -
Organism   Enterobacter kobei strain STW0522-60     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1737985..1748611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLF31_RS08430 (STW0522ENT60_16450) - 1738383..1740143 (-) 1761 WP_047028048.1 Lon protease family protein -
  JLF31_RS08435 (STW0522ENT60_16460) matP 1740330..1740782 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  JLF31_RS08440 (STW0522ENT60_16470) ompA 1740847..1741902 (-) 1056 WP_014883252.1 porin OmpA -
  JLF31_RS08445 (STW0522ENT60_16480) sulA 1742258..1742767 (-) 510 WP_058690679.1 SOS-induced cell division inhibitor SulA -
  JLF31_RS08450 (STW0522ENT60_16490) sxy/tfoX 1742985..1743611 (+) 627 WP_058690680.1 TfoX/Sxy family DNA transformation protein Regulator
  JLF31_RS08455 (STW0522ENT60_16500) yccS 1743568..1745730 (-) 2163 WP_058690681.1 YccS family putative transporter -
  JLF31_RS08460 (STW0522ENT60_16510) - 1745750..1746196 (-) 447 WP_058690682.1 YccF domain-containing protein -
  JLF31_RS08465 (STW0522ENT60_16520) helD 1746320..1748374 (+) 2055 WP_058690683.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23941.60 Da        Isoelectric Point: 9.3304

>NTDB_id=78165 JLF31_RS08450 WP_058690680.1 1742985..1743611(+) (sxy/tfoX) [Enterobacter kobei strain STW0522-60]
MKKISYERIYQSQQYLSPLGEIHHRALFGGYTLAIDDAVFAMVSDGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERCQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARECWLKMRAKN
RALGIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQKNHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=78165 JLF31_RS08450 WP_058690680.1 1742985..1743611(+) (sxy/tfoX) [Enterobacter kobei strain STW0522-60]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCCCAGCAATACCTCTCACCGCTAGGAGAAATTCATCATCGCGCACT
GTTCGGTGGCTATACCCTGGCGATAGATGACGCGGTTTTTGCCATGGTGTCAGATGGCGAGCTGTACCTTCGCGCCTGTG
AAGAAAGCGCGAAATACTGTGTAAAAAATGCCGCCTCTTTTTTGACGCTGATGAAACGAGGCCGCCCGGTACTTCTCAAC
TATTACCGTGTCGATGATGGACTGTGGCAAGACAGGGAACGGCTGCTTCAGCTCTCCTCTTTCGCGCTCAATGCGGCGAG
GAAAGAGCGCTGTCAGCGCCATCAACGAAACCGGCTTAAAGATCTGCCAAACCTGACCTTTCAGCTTGAGGTATTGCTTT
TTGAAGCTGGCATTACTAACGAAGAGACGCTGCGGGCACTGGGTGCCAGGGAGTGCTGGTTAAAGATGCGGGCTAAAAAT
AGGGCACTCGGTATTAAAGTGCTCTTTGCCCTTGAGGGGGCTATTGAGGGTTTGCATGAGGCGGCACTCCCGGCAGGCAT
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGAAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(15-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

56.65

97.596

0.553

Multiple sequence alignment