Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   Q0Y58_RS17200 Genome accession   NZ_CP129997
Coordinates   3075024..3075380 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain PA1045     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3070024..3080380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0Y58_RS17175 fabF 3070236..3071480 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  Q0Y58_RS17180 pabC 3071480..3072295 (+) 816 WP_302120021.1 aminodeoxychorismate lyase -
  Q0Y58_RS17185 mltG 3072301..3073350 (+) 1050 WP_003130717.1 endolytic transglycosylase MltG -
  Q0Y58_RS17190 tmk 3073379..3074011 (+) 633 WP_023097407.1 dTMP kinase -
  Q0Y58_RS17195 - 3074004..3074990 (+) 987 WP_023875119.1 DNA polymerase III subunit delta' -
  Q0Y58_RS17200 pilZ 3075024..3075380 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  Q0Y58_RS17205 - 3075395..3076171 (+) 777 WP_003091117.1 TatD family hydrolase -
  Q0Y58_RS17210 - 3076397..3077530 (-) 1134 WP_034072197.1 aminotransferase class V-fold PLP-dependent enzyme -
  Q0Y58_RS17215 - 3077616..3078254 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  Q0Y58_RS17220 - 3078404..3079300 (+) 897 WP_003091113.1 radical SAM protein -
  Q0Y58_RS17225 - 3079365..3079997 (+) 633 WP_302120025.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=781649 Q0Y58_RS17200 WP_003091119.1 3075024..3075380(+) (pilZ) [Pseudomonas aeruginosa strain PA1045]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=781649 Q0Y58_RS17200 WP_003091119.1 3075024..3075380(+) (pilZ) [Pseudomonas aeruginosa strain PA1045]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTTTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTTGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCTCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449