Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   M0P24_RS09995 Genome accession   NZ_CP116957
Coordinates   1975508..1976479 (-) Length   323 a.a.
NCBI ID   WP_003062926.1    Uniprot ID   A0AAW6YE98
Organism   Streptococcus pasteurianus strain WUSP070     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1970508..1981479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS09960 (M0P24_09960) pepA 1970634..1971701 (+) 1068 WP_003062933.1 glutamyl aminopeptidase -
  M0P24_RS09965 (M0P24_09965) proC 1971762..1972532 (+) 771 WP_003062932.1 pyrroline-5-carboxylate reductase -
  M0P24_RS09970 (M0P24_09970) - 1972576..1973214 (-) 639 WP_003062931.1 CPBP family intramembrane glutamic endopeptidase -
  M0P24_RS09975 (M0P24_09975) - 1973226..1973678 (-) 453 WP_003062930.1 hypothetical protein -
  M0P24_RS09980 (M0P24_09980) - 1973691..1973900 (-) 210 WP_003062929.1 hypothetical protein -
  M0P24_RS09985 (M0P24_09985) - 1973910..1974110 (-) 201 WP_013851401.1 helix-turn-helix transcriptional regulator -
  M0P24_RS09990 (M0P24_09990) - 1974271..1975470 (-) 1200 WP_003062927.1 acetate kinase -
  M0P24_RS09995 (M0P24_09995) comYH 1975508..1976479 (-) 972 WP_003062926.1 class I SAM-dependent methyltransferase Machinery gene
  M0P24_RS10000 (M0P24_10000) comYG 1976534..1976866 (-) 333 WP_003062925.1 competence type IV pilus minor pilin ComGG Machinery gene
  M0P24_RS10005 (M0P24_10005) comYF 1976838..1977275 (-) 438 WP_041974065.1 competence type IV pilus minor pilin ComGF Machinery gene
  M0P24_RS10010 (M0P24_10010) comGE 1977259..1977552 (-) 294 WP_080543606.1 competence type IV pilus minor pilin ComGE -
  M0P24_RS10015 (M0P24_10015) comYD 1977506..1977937 (-) 432 WP_003062922.1 competence type IV pilus minor pilin ComGD Machinery gene
  M0P24_RS10020 (M0P24_10020) comYC 1977921..1978214 (-) 294 WP_003062921.1 competence type IV pilus major pilin ComGC Machinery gene
  M0P24_RS10025 (M0P24_10025) comYB 1978214..1979257 (-) 1044 WP_003062919.1 competence type IV pilus assembly protein ComGB Machinery gene
  M0P24_RS10030 (M0P24_10030) comYA 1979181..1980122 (-) 942 WP_003062917.1 competence type IV pilus ATPase ComGA Machinery gene
  M0P24_RS10035 (M0P24_10035) - 1980193..1980555 (-) 363 WP_003062916.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 36594.62 Da        Isoelectric Point: 4.4130

>NTDB_id=781644 M0P24_RS09995 WP_003062926.1 1975508..1976479(-) (comYH) [Streptococcus pasteurianus strain WUSP070]
MNFEKIETAYELILENIQLIENELKTHIYDALIEQNSFYLGAEGASEEVAANNEKLRQLALTKEEWRRAFQFIFIKAGQT
EQLQANHQFTPDAIGFILLFLIENLTDSDKIDLLEIGSGTGNLAQTFLNNSSKELNYLGIEVDDLLIDLSASIAEVMDSD
ARFIQEDAVRPQILQESDVIISDLPVGFYPNDDIAKRYKVASSDEHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKQWLKDYADIIAVITLPESIFGNAANAKSIFVLKKQAAQTPETFVYPLSDLQSRETLTDFIGKFQKWKVDNMNFKK
NVI

Nucleotide


Download         Length: 972 bp        

>NTDB_id=781644 M0P24_RS09995 WP_003062926.1 1975508..1976479(-) (comYH) [Streptococcus pasteurianus strain WUSP070]
ATGAATTTTGAAAAAATTGAAACAGCCTATGAGCTGATTTTAGAAAATATCCAATTAATTGAAAATGAGTTAAAAACTCA
TATTTATGATGCGCTTATTGAACAGAACTCTTTTTACTTGGGTGCTGAAGGTGCCAGTGAAGAAGTTGCTGCCAACAATG
AGAAACTGCGTCAGCTTGCATTGACCAAAGAAGAGTGGCGTCGAGCTTTCCAATTTATCTTTATCAAAGCTGGTCAAACA
GAGCAACTGCAAGCCAATCATCAATTTACACCAGATGCTATTGGTTTTATTTTGCTGTTCTTGATTGAAAATCTGACAGA
TTCAGATAAAATTGACCTTTTAGAAATTGGTAGTGGGACAGGGAACCTTGCTCAAACATTCTTAAATAATTCGTCTAAAG
AATTAAATTATCTTGGTATTGAAGTTGACGATTTGTTGATTGATTTATCAGCAAGTATTGCAGAAGTGATGGATTCTGAT
GCTCGGTTTATTCAAGAAGACGCTGTGCGTCCACAAATTCTACAAGAAAGTGATGTGATTATTAGTGATTTGCCAGTGGG
TTTCTATCCTAATGATGACATTGCAAAACGTTATAAAGTGGCAAGTTCTGATGAGCATACCTATGCCCACCATTTGTTAA
TGGAACAATCGTTAAAATATCTCAAAAAAGATGGTATTGCAGTCTTTTTGGCGCCCGTTAGTCTTTTGACAAGCAAACAG
AGTGATTTATTGAAACAATGGTTGAAAGATTACGCGGATATTATCGCCGTGATTACTTTGCCAGAATCTATTTTTGGCAA
TGCAGCGAATGCGAAATCAATTTTTGTTTTGAAAAAACAAGCTGCGCAGACGCCAGAAACCTTTGTTTATCCACTTTCTG
ACTTACAAAGTCGTGAAACTCTGACCGATTTCATTGGAAAATTTCAAAAATGGAAAGTTGATAATATGAATTTTAAAAAA
AATGTGATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(70-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

68.987

97.833

0.675
  comYH Streptococcus mutans UA159

68.671

97.833

0.672