Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   M0P24_RS07295 Genome accession   NZ_CP116957
Coordinates   1459562..1461364 (-) Length   600 a.a.
NCBI ID   WP_248498005.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP070     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1454562..1466364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS07275 (M0P24_07275) - 1456468..1457514 (-) 1047 WP_248498002.1 peptidyl-prolyl cis-trans isomerase -
  M0P24_RS07280 (M0P24_07280) - 1457584..1458285 (-) 702 WP_248498003.1 O-methyltransferase -
  M0P24_RS07285 (M0P24_07285) - 1458339..1458950 (-) 612 WP_117479306.1 HAD-IA family hydrolase -
  M0P24_RS07290 (M0P24_07290) - 1458972..1459490 (-) 519 WP_248498004.1 GNAT family N-acetyltransferase -
  M0P24_RS07295 (M0P24_07295) pepF 1459562..1461364 (-) 1803 WP_248498005.1 oligoendopeptidase F Regulator
  M0P24_RS07300 (M0P24_07300) - 1461354..1462325 (-) 972 WP_248498006.1 competence protein CoiA -
  M0P24_RS07305 (M0P24_07305) - 1462379..1463095 (-) 717 WP_248498007.1 pseudouridine synthase -
  M0P24_RS07310 (M0P24_07310) nagB 1463171..1463875 (-) 705 WP_013851605.1 glucosamine-6-phosphate deaminase -
  M0P24_RS07315 (M0P24_07315) - 1464003..1464503 (-) 501 WP_003063844.1 VIT1/CCC1 transporter family protein -
  M0P24_RS07320 (M0P24_07320) queA 1464679..1465707 (+) 1029 WP_003063841.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68881.88 Da        Isoelectric Point: 4.5704

>NTDB_id=781625 M0P24_RS07295 WP_248498005.1 1459562..1461364(-) (pepF) [Streptococcus pasteurianus strain WUSP070]
MSDNRSHIDEKYQWDLSTVFATDDAWEAELVSLDSDLENAKAYKGHLTASSNDLLAITESYLALSRRLEKLYVYASMKND
QDTTVAKYQEYQAKATAIYAKFSEIFAFYEPELMQLSKESFEDFVAETPALSAYAHFFEQLFKRQPHVLSQAEEELLAGA
QEIFGAAGETFGILDNADIIFPIVLDDEGKEIQLTHGNFISLLESKNRDVRKEAYQALYATYEQFQHTYAKTLQTNVKVH
NYEARVHHFKSAREAALSANFIPESVYDTLIETVNANLPLLHRYVELRKKILKLDDLKMYDIHTPLSEMDMSFSYEEALA
KAEDVLAVFGKEYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHYLDGFKSTIFRQAQFAEFEDIIHKADQAGEVLTSDY
LNQLYADLNEKYYGLSKTDNLEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTQADIDCYLDYLKAGNSDYPL
NVIKKAGVDMTTSAYLDAAFRIFEERLDELEALIEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=781625 M0P24_RS07295 WP_248498005.1 1459562..1461364(-) (pepF) [Streptococcus pasteurianus strain WUSP070]
ATGTCAGATAATCGTAGTCATATTGATGAAAAATACCAATGGGATTTAAGCACAGTTTTTGCTACAGATGATGCTTGGGA
AGCGGAGCTGGTTAGTCTTGATAGTGATTTAGAAAATGCTAAAGCTTACAAAGGGCATTTGACAGCGTCAAGTAATGATT
TGCTTGCTATTACGGAAAGTTACCTTGCCTTGTCGCGTCGTTTGGAGAAGCTTTATGTTTATGCTTCAATGAAAAACGAC
CAAGATACAACAGTAGCCAAATACCAAGAATACCAAGCTAAAGCAACAGCAATCTATGCCAAATTTAGTGAAATTTTTGC
TTTTTACGAACCTGAATTGATGCAATTGTCTAAAGAATCTTTTGAGGATTTCGTGGCAGAAACACCAGCTTTATCTGCTT
ATGCACATTTCTTTGAGCAACTTTTCAAACGTCAACCGCATGTTTTGTCACAGGCTGAGGAAGAATTGTTAGCAGGTGCG
CAAGAAATTTTTGGAGCTGCAGGAGAAACATTTGGGATTTTGGATAATGCTGACATCATTTTTCCAATCGTTCTAGATGA
TGAGGGCAAAGAAATTCAGCTAACGCATGGTAATTTCATTAGCTTGTTAGAATCAAAAAATCGTGATGTCCGCAAAGAAG
CTTACCAAGCTTTGTATGCAACTTATGAACAATTCCAACACACTTATGCGAAAACCTTGCAAACCAACGTCAAAGTGCAT
AACTATGAAGCGCGTGTTCATCATTTTAAATCAGCGCGTGAGGCAGCACTTTCGGCTAATTTTATTCCAGAATCTGTTTA
TGATACCTTGATTGAAACGGTCAATGCTAACCTGCCTTTGCTTCATCGTTACGTGGAACTTCGCAAGAAAATCCTTAAAC
TGGATGATTTGAAAATGTACGATATTCATACGCCACTTTCTGAAATGGATATGAGTTTTAGCTATGAAGAAGCTTTGGCA
AAAGCTGAAGATGTCTTGGCTGTTTTTGGCAAAGAATATTCTGAGCGTGTTCATCGTGCTTTTACAGAACGCTGGATTGA
CGTCCATGTCAATAAAGGCAAACGCTCTGGTGCCTACTCTGGTGGTTCGTATGATACCAATGCTTTCATGCTGTTAAATT
GGCAAGATACCTTGGATAATTTGTTTACCTTAGTTCACGAAACGGGGCACAGCTTGCATTCGACATTTACACGTGAAAAT
CAACCCTATGTTTATGGAGATTATAGTATTTTCTTGGCAGAAATTGCTTCAACAACTAATGAAAATATTTTGACAGAAAC
ACTTTTGAAAGAAGTTGATGATGACAAAGCACGCTTTGCAATTTTGAATCATTATCTTGATGGTTTCAAGAGTACCATTT
TCCGTCAAGCACAATTTGCGGAATTTGAAGATATCATTCATAAGGCAGACCAAGCTGGAGAAGTGTTGACGAGTGATTAC
CTCAACCAACTTTATGCCGACTTAAACGAGAAATATTATGGACTCAGCAAAACAGACAACCTAGAAATCCAATACGAATG
GGCACGCATTCCGCATTTCTACTACAATTACTATGTTTACCAATACGCCACAGGATTTGCGGCAGCTAGTTATTTAGCTG
ATAAGGTTGTTCACGGTACACAAGCTGATATTGACTGCTACCTTGATTATCTGAAAGCAGGTAATTCTGATTATCCGCTT
AATGTGATCAAAAAAGCTGGTGTGGATATGACAACAAGTGCTTATCTAGACGCTGCTTTCCGAATTTTTGAGGAACGCTT
GGATGAGTTGGAAGCTTTAATTGAAAAAGGAGCACATCTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.333

100

0.703