Detailed information NTG0078160

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: MWM20_RS21990
• Genome accession: NZ_AP025677
• Coordinates: 4550087..4551112 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644896.1
• Uniprot ID: -
• Organism: Escherichia coli strain Rb-23
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4545087..4556112

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MWM20_RS21970 (TRECRb23_41750)	metJ	4546272..4546589 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
MWM20_RS21975 (TRECRb23_41760)	yiiX	4546649..4547257 (+)	609	WP_000702298.1	YiiX family permuted papain-like enzyme	-
MWM20_RS21980 (TRECRb23_41770)	rpmE	4547318..4547530 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
MWM20_RS21985 (TRECRb23_41780)	priA	4547733..4549931 (+)	2199	WP_001385598.1	primosomal protein N'	Machinery gene
MWM20_RS21990 (TRECRb23_41790)	cytR	4550087..4551112 (+)	1026	WP_000644896.1	DNA-binding transcriptional regulator CytR	Regulator
MWM20_RS21995 (TRECRb23_41800)	ftsN	4551204..4552163 (+)	960	WP_000068834.1	cell division protein FtsN	-
MWM20_RS22000 (TRECRb23_41810)	hslV	4552256..4552786 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
MWM20_RS22005 (TRECRb23_41820)	hslU	4552796..4554127 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
MWM20_RS22010 (TRECRb23_41830)	menA	4554194..4555120 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
MWM20_RS22015 (TRECRb23_41840)	rraA	4555213..4555698 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
MWM20_RS22020 (TRECRb23_41850)	zapB	4555783..4556028 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37794.75 Da
• Isoelectric Point: 6.1606

>NTDB_id=78160 MWM20_RS21990 WP_000644896.1 4550087..4551112(+) (cytR) [Escherichia coli strain Rb-23]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALCRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=78160 MWM20_RS21990 WP_000644896.1 4550087..4551112(+) (cytR) [Escherichia coli strain Rb-23]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTAATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGTGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.582	98.24	0.625
cytR	Vibrio cholerae C6706	64.832	95.894	0.622